On 2011-02-11 23:23, Thomas Person wrote: > Howdy all, > > I'm still having issues with the Illumina Plug in, > > When running the job the summary window gives: Bead Summary importer > Executing: New raw bioassay -parsed 93094 lines in 2 files Preparing > database for import... Then eventually crashes with OutOfMemoryErrror: > Java heap space. I've tried upping Xmx up to 2gb under CATALINA_OPTS. > and setting the Illumina Bead Summary importer plugin max memory to 1gb, > but still no luck. > > Thanks in advance for your help,
This seems strange. 2Gb should be more than enough. The memory setting on the plug-in is only used when running on a a job agent but even 1Gb should be enough. Our test data set is about the same size as your data set and when I made a test today the memory usage peeked at 300Mb. Please check the information in Help -> About -> Configuration to verify your memory settings. /Nicklas ------------------------------------------------------------------------------ The ultimate all-in-one performance toolkit: Intel(R) Parallel Studio XE: Pinpoint memory and threading errors before they happen. Find and fix more than 250 security defects in the development cycle. Locate bottlenecks in serial and parallel code that limit performance. http://p.sf.net/sfu/intel-dev2devfeb _______________________________________________ The BASE general discussion mailing list basedb-users@lists.sourceforge.net unsubscribe: send a mail with subject "unsubscribe" to basedb-users-requ...@lists.sourceforge.net
