I haven't seen anyone do this, Iddo, but I have an idea of how this could be done. I have the COGs built into HMMs, and you could use these together with an HMM-HMM comparison tool to get the distance mappings.
Cheers, Marty On Dec 21, 2007 5:00 PM, Iddo Friedberg <[EMAIL PROTECTED]> wrote: > Hi, > > Is there an all-vs-all comparison of COGs out there? I am basically looking > for a distance mapping based on profile alignments between COG families. Has > this been done? > > thanks, > > Iddo > > > > -- > > I. Friedberg > > "The only problem with troubleshooting is that > sometimes trouble shoots back." > _______________________________________________ > BBB mailing list > [email protected] > http://www.bioinformatics.org/mailman/listinfo/bbb > -- -- Martin Gollery Senior Bioinformatics Scientist TimeLogic- a Division of Active Motif 775-833-9113 880 Northwood Blvd. Suite 7 Incline Village, NV 89451 _______________________________________________ BBB mailing list [email protected] http://www.bioinformatics.org/mailman/listinfo/bbb
