Received the attached from a friend who was involved in the development of flybase. Hope it helps.
Dennis Dennis J. Gurgul Research Computing Partners Health Care 617.724.3169 http://www.partners.org/rescomputing >https://research.partners.org/wiki/index.php/HPC_Clusters -----Original Message----- From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED] On Behalf Of Mike Marchywka Sent: Thursday, November 08, 2007 8:19 AM To: [email protected] Subject: [BiO BB] anyone familiar with flybase or scaffolding nomenclature? Hi, I read this http://www.nih.gov/news/pr/nov2007/nhgri-07.htm and thought it may be interesting to go get 12 assembled small genomes to search for various polymoprhisms and test some code. I downloaded the fasta files from flybase and hunted around their site for a while but I couldn't figure out what the scaffold names mean or if there is a set of assembled genomes somewhere. Anyone have a link to relevant tutorial info? For that matter, can anyone suggest another set of closely related organisms ( breeds within species or cultivars among plants, I'm quite open to ideas) with small genomes for testing? Thanks. Mike Marchywka 586 Saint James Walk Marietta GA 30067-7165 404-788-1216 (C)<- leave message 989-348-4796 (P)<- emergency only [EMAIL PROTECTED] Note: Hotmail is blocking my mom's entire ISP claiming it is to reduce spam but probably to force users to use hotmail. Please DON'T assume I am ignoring you and try me on [EMAIL PROTECTED] if no reply here. Thanks. _________________________________________________________________ You IM, we give. Make every IM count for the cause of your choice. Join Now. http://im.live.com/messenger/im/home/?source=TAGHM The information transmitted in this electronic communication is intended only for the person or entity to whom it is addressed and may contain confidential and/or privileged material. Any review, retransmission, dissemination or other use of or taking of any action in reliance upon this information by persons or entities other than the intended recipient is prohibited. If you received this information in error, please contact the Compliance HelpLine at 800-856-1983 and properly dispose of this information.
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