>> I also use many tricks to reuse computations across various proteins. >> For example, the matrix for protein "ABCDE", is identical, at first
Have you gotten any blast source code? This would be a good thing to start with for a number of reasons. But, don't assume that a given implementation is either well optimized of naive. Sure, they could have code like get_parameters(); metric=do_expensive_metric_thing(); if ( metric _________________________________________________________________ Helping your favorite cause is as easy as instant messaging. You IM, we give. http://im.live.com/Messenger/IM/Home/?source=text_hotmail_join _______________________________________________ BBB mailing list [email protected] http://www.bioinformatics.org/mailman/listinfo/bbb
