Ey, DAS protocol looks very interesting for what I want to do. Thanks a lot to all of you! Paco
2008/2/12 Charles Danko <[EMAIL PROTECTED]>: > Hi, Paco, > > If you want to do it all programmically from Java, I would suggest > Googling a protocol called DAS. ENSEMBL has a DAS server from which > you should be able to pull GO annotations for ENSEMBL IDs quite > easily. > > You can find java-based libraries to access a DAS connection, and > parse the resulting information here: > http://www.spice-3d.org/dasobert/. > > Good luck! > Charles > > 2008/2/12 ocean <[EMAIL PROTECTED]>: > > Hey,Paco > > > > i think you can try BIOMART(www.biomart.org). this database had done > such thing already. > > you can contract them for some help. > > > > good luck! > > > > Huhaiyang > > > > > > > > > > 在2008-02-12，"Paco B C" <[EMAIL PROTECTED]> 写道： > > > > > > Hi! > > this is my first message in this list. My name is Paco and I'm doing my > PhD. > > on Bioinformatics in University of Leuven, Belgium. > > I would like to build a java module that, given a list of Ensembl Gene > > Identifiers, it would give back their related Gene Ontology terms. I've > > accessed the GO database, but I can't find ENSG terms and I've read in > the > > Ensembl website that they give the link to external databases for > > translation and transcript objects but not for genes (maybe in the > future, > > but not now). > > My question is, do you know which database could I query in order to get > > this relation within Ensembl and GO terms? > > Thanks! > > Paco > > _______________________________________________ > > BBB mailing list > > [email protected] > > http://www.bioinformatics.org/mailman/listinfo/bbb > > _______________________________________________ > > BBB mailing list > > [email protected] > > http://www.bioinformatics.org/mailman/listinfo/bbb > > > > _______________________________________________ > BBB mailing list > [email protected] > http://www.bioinformatics.org/mailman/listinfo/bbb > _______________________________________________ BBB mailing list [email protected] http://www.bioinformatics.org/mailman/listinfo/bbb
