Mark How about TwinScan? It employs the concept of an 'informant' database which in this case would be C. neoformans (as I recall).
Good luck Mike On Mar 15, 2008, at 12:30 PM, <[EMAIL PROTECTED]> wrote: > > Hello, BBB. > > A am trying to annotate a recently completed fungal genome. I have > been able to train GLimmerHMM against Aspergillus, scan my genome > and generate a list of exons. But that's the extent of my > experience so far. > > ? Are the other genefinders I should be trying? I had trouble > compiling GeneZilla. > ? Are there existing programs that can use a genomic FASTA file and > Glimmer coordinates to write out protein sequences in FASTA format? > Or do people in my position usually write their own script? > ? Are there good on-line discussion groups for this sort of topic? > > Thanks, > Mark > _______________________________________________ > BBB mailing list > [email protected] > http://www.bioinformatics.org/mailman/listinfo/bbb _______________________________________________ BBB mailing list [email protected] http://www.bioinformatics.org/mailman/listinfo/bbb
