I've used the Protein3dfit link from here ,
http://biotool.uni-koeln.de but it seems to be down right now. One suggestion I would make, however, is to offer an API and not just a web interface. I have a script to use the above link so I can submit files from a command line ( and integrate into automated stuff) and I imagine your form could be reverse engineered too. Trying to reverse engineer html is always annoying and it would probably be easier for you to write your web pages on top of a documented stable API. Whlie the interactive java viwer may not make much sense in this usage situation, your do offer pdf and pdb downloads that could be automated- if there is really something in the pdf that is not in the pdb, text format may be easier although certainly the pdb file is quite usable for automated analysis. Mike Marchywka 586 Saint James Walk Marietta GA 30067-7165 404-788-1216 (C)<- leave message 989-348-4796 (P)<- emergency only [EMAIL PROTECTED] Note: If I am asking for free stuff, I normally use for hobby/non-profit information but may use in investment forums, public and private. Please indicate any concerns if applicable. Note: Hotmail is possibly blocking my mom's entire ISP - try me on [EMAIL PROTECTED] if no reply here. Thanks. > From: [EMAIL PROTECTED] > Date: Mon, 31 Mar 2008 16:35:07 -0400 > To: [email protected] > Subject: Re: [BiO BB] TopMatch protein structure alignment and superposition > web service > > is it faster or better than MAFFT, which I use currently ? > http://align.bmr.kyushu-u.ac.jp/mafft/online/server/ > > > > > > > _______________________________________________ > BBB mailing list > [email protected] > http://www.bioinformatics.org/mailman/listinfo/bbb _________________________________________________________________ How well do you know your celebrity gossip? http://originals.msn.com/thebigdebate?ocid=T002MSN03N0707A _______________________________________________ BBB mailing list [email protected] http://www.bioinformatics.org/mailman/listinfo/bbb
