I could not find 1AAI in http://www.ebi.ac.uk/pdbsum/ Is it mistyped?
Anyway click http://www.charite.de/bioinf/strap/ce.php?align=PDB%3A1aai%3AA+PDB%3A1rzo%3AC+PDB%3A1uq5%3AA+PDB%3A1uq4%3AA Click the tool button "Op-tions" at the bottom and activate check-box "Full functionality" to activate the menu-bar. Menu-bar->Analyze->Compare proteins You could select either rmsd-value or TM-align score or CE-score or clustalw-score. Is it what you need? > Hello all, > > I have four proteins. 1AAI:A 1RZO:C 1UQ5:A 1UQ4:A > > Only 1RZO:C, 1UQ5:A and 1UQ4:A have Uniprot accession No. > > 1RZO:C is P06750 > 1UQ5:A and 1UQ4:A are P02879 > > I am interested in comparing biological distance of 1AAI:A with the other > three. Would some one please tell me how to do that? > > Thanks a lot. > > -- > Xue, Li > Bioinformatics and Computational Biology program @ ISU > Ames, IA 50010 > 515-450-7183 > _______________________________________________ > BBB mailing list > [email protected] > http://www.bioinformatics.org/mailman/listinfo/bbb > _______________________________________________ BBB mailing list [email protected] http://www.bioinformatics.org/mailman/listinfo/bbb
