Thats a bit of an ill-posed question. Most commonly seen among all genes? Among all solved protein structures? Superfamilies with the largest number of family members? Most frequent if you would take a random sample of proteins from a living cell? ... There are many possible sets to choose from, not all of them in some way biologically relevant.
If you want an overview of what's out there, browse CATH or SCOP. CATH architectures and SCOP superfamilies probably come closest to a concept of "representative". http://www.cathdb.info/ http://scop.mrc-lmb.cam.ac.uk/scop/ HTH, Boris On 30-Jun-08, at 11:07 PM, mahesh chandran wrote: > Hi friends ,just help me out with this problem.How to find the > highly > representative protein folds ?In other words, i would like to know > the top > 10 folds that are most commonly seen in proteins. > _______________________________________________ > BBB mailing list > [email protected] > http://www.bioinformatics.org/mailman/listinfo/bbb _______________________________________________ BBB mailing list [email protected] http://www.bioinformatics.org/mailman/listinfo/bbb
