Also, there is pops: http://pops.csse.monash.edu.au/
On Tue, Nov 11, 2008 at 3:48 AM, Vered Caspi <[EMAIL PROTECTED]> wrote: > Hello, > > I received mass spec data for proteins (tryptic peptides) of a rare > organism. Data analysis using web-based programs against standard protein > databases did not yield results. > > We would like to run the analysis against a collection of the protein > sequences from our organism, which we have constructed in-house. > > My question is whether there is a public program which can accept the > protein sequences, "cut" them bioinformatically, and use that to identify > the proteins analyzed in the mass sptrometry. > > Vered > > ______________________________________________________________ > Vered Caspi, Ph.D. > Bioinformatics Core Facility, Head > National Institute for Biotechnology in the Negev > Building 39, room 214 > Ben-Gurion University of the Negev > Beer-Sheva 84105, Israel > > Email: <mailto:[EMAIL PROTECTED]> [EMAIL PROTECTED] > Tel: 08-6479034 054-7915969 > Fax: 08-6472983 > > <http://bioinfo.bgu.ac.il> http://bioinfo.bgu.ac.il > ______________________________________________________________ > > > > _______________________________________________ > BBB mailing list > [email protected] > http://www.bioinformatics.org/mailman/listinfo/bbb > -- Iddo Friedberg, Ph.D. Atkinson Hall, mail code 0446 University of California, San Diego 9500 Gilman Drive La Jolla, CA 92093-0446, USA T: +1 (858) 534-0570 http://iddo-friedberg.org _______________________________________________ BBB mailing list [email protected] http://www.bioinformatics.org/mailman/listinfo/bbb
