Thanks every one for the tips. I ended up using the taxonomy files from genbank and uniprot and sorting them according to the organism.
Cheers, yvan On Tue, Nov 11, 2008 at 9:50 PM, Hongyu Zhang <[EMAIL PROTECTED]> wrote: > My solution is to download the taxonomy files from Genebank, which contain > the information of the taxonomy numbers for all GI numbers and the > hierarchical taxonomy tree structure. You can write a program to partition > the protein NR file into separated files/folders, each belonging to a > specific taxonomy number that is a descendant of the eukaryote node in the > taxonomy tree. > > The location of the Genbank taxonomy files is > ftp://ftp.ncbi.nih.gov/pub/taxonomy/ > _______________________________________________ > BBB mailing list > [email protected] > http://www.bioinformatics.org/mailman/listinfo/bbb > _______________________________________________ BBB mailing list [email protected] http://www.bioinformatics.org/mailman/listinfo/bbb
