Hi Huang, There are several easy to implement computational approaches to predict gene/protein function from interaction networks. Take a look at Section 8 of a survey we have written on function prediction techniques ( http://www-users.cs.umn.edu/~kumar/papers/survey.php), which discusses several such approaches for protein interaction networks. Also, feel free to contact me at [EMAIL PROTECTED], and I might be able to share with you an implementation of the FunctionalFlow algorithm (Nabieva et al, ISMB 2005), which is popular for this problem.
Good luck, Gaurav On Fri, Nov 28, 2008 at 7:27 AM, Kie Kyon Huang <[EMAIL PROTECTED]>wrote: > hi everyone, > > i would like to know if anyone knows of software that can infer function > for > uncharacterised gene using protein interaction network? > > thanks > > Huang > _______________________________________________ > BBB mailing list > [email protected] > http://www.bioinformatics.org/mailman/listinfo/bbb > -- Gaurav Pandey Email: [EMAIL PROTECTED] Computer Science Department Webpage: www.cs.umn.edu/~gaurav University of Minnesota Tel: 612-701-2494 _______________________________________________ BBB mailing list [email protected] http://www.bioinformatics.org/mailman/listinfo/bbb
