Let me also recommend vmatch (http://www.vmatch.de/), that search for maximal repeats. It is not open source nor can it be downloaded immediately, but a free of charge licence can be obtained by sending an email to its developer (Stefan Kurtz)
On Tue, Dec 9, 2008 at 18:38, Seema Trivedi <[EMAIL PROTECTED]> wrote: > > Hi > One program is SPUTNIK at the following link > http://espressosoftware.com/pages/sputnik.jsp > but one will have to modify it a bit to take longer sequences as it analyzes > only short seq. You can also use the online version of the same at > http://cbi.labri.fr/outils/Pise/sputnik.html. > The modified version of this program is available possibly with MORGANTE > MICHELE [EMAIL PROTECTED] as indicated in the following link > http://bioinf.dimi.uniud.it/software/software/sputnik. However, do not know > the drawbacks of this modified version. > > Seema Trivedi > > > > >> Date: Mon, 8 Dec 2008 09:55:11 -0800 >> From: [EMAIL PROTECTED] >> To: [email protected] >> Subject: Re: [BiO BB] finding repeat sequences >> >> http://tandem.bu.edu/trf/trf.html >> >> >> >> On Fri, Dec 5, 2008 at 9:05 PM, jalil fallah <[EMAIL PROTECTED]> wrote: >> >> > Dear all , >> > >> > I was wondering if you would mind answering my request. >> > How could I access to a software or a database to find tandem repeat >> > sequences in a prokaryotic gene ? >> > >> > Thank you in advance >> > >> > >> > -- >> > Jalil Fallah >> > Ph.D Candidate of Medical Bacteriology >> > Dep. of Bacteriology >> > School of Medicine >> > Tarbiat Modarres University >> > Tehran - Iran >> > P.O.Box 14115-331 >> > Cell Phone +98- 912- 5093060 >> > _______________________________________________ >> > BBB mailing list >> > [email protected] >> > http://www.bioinformatics.org/mailman/listinfo/bbb >> > >> >> >> >> -- >> Iddo Friedberg, Ph.D. >> Atkinson Hall, mail code 0446 >> University of California, San Diego >> 9500 Gilman Drive >> La Jolla, CA 92093-0446, USA >> T: +1 (858) 534-0570 >> http://iddo-friedberg.org >> _______________________________________________ >> BBB mailing list >> [email protected] >> http://www.bioinformatics.org/mailman/listinfo/bbb > > _________________________________________________________________ > Search for videos of Bollywood, Hollywood, Mollywood and every other wood, > only on Live.com > http://www.live.com/?scope=video&form=MICOAL > _______________________________________________ > BBB mailing list > [email protected] > http://www.bioinformatics.org/mailman/listinfo/bbb > -- Matthias Gallé Gaudeamus igitur _______________________________________________ BBB mailing list [email protected] http://www.bioinformatics.org/mailman/listinfo/bbb
