first u have to done multiple sequence alignment using any available software.In output u will get the evolutionary similar sequences according to the e-values.
On 12/9/08, T Joshi <[EMAIL PROTECTED]> wrote: > > Hi, > I have some small short sequences of less than 40nt. I want to check > if they are evolutionarily conserved across some species. > > One way I could do so is to download conservation track from UCSC in > .aln format and use that with clustalw or clustalx for alignment with > my query sequences. Blastn also doesn't have any database containing > information on conservation. > > Could you suggest some other way by which I could do so without > downloading the conservation track ? > > Thanks a lot.. > > _______________________________________________ > BBB mailing list > [email protected] > http://www.bioinformatics.org/mailman/listinfo/bbb > -- Manoj Kumar Yadav Research Scholar, Center for Bioinformatics BHU,Varanasi +91 9838016500 _______________________________________________ BBB mailing list [email protected] http://www.bioinformatics.org/mailman/listinfo/bbb
