Raja Loganantharaj wrote:
Kie Kyon Huang wrote:
Hi everybody,
I need a mapping file from Refseq ID/GI number (e.g.
gi|17538053|ref|NP_495443.1|) from several model organisms to their
respective database ID.
I need to find the corresponding ID in WormBase (e.g. WBGene00000001),
FlyBase (e.g. FBgn0043467), Ecoliwiki (e.g.
1-ACYLGLYCEROL-3-P-ACYLTRANSFER-MONOMER)
Can anyone direct me to the respective files? Or do i have to create the
files myself?
Thanks a lot.
Huang kie Kyon
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look at the gene id conversion in DAVID at
http://david.abcc.ncifcrf.gov/conversion.jsp
Hope this will work for you.
Raja Loganantharaj
Bioinformatics Research Lab
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hi
Try using g:convert for database identifier conversions within a specie
and g:orth for mapping IDs between species @ http://biit.cs.ut.ee/gprofiler/
One example :
http://biit.cs.ut.ee/gprofiler/gorth.cgi?organism=celegans&target=dmelanogaster&output=html&query=NP_495443
Cheers,
hedi.
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