Hi ! U may try the QSITE FINDER - http://www.modelling.leeds.ac.uk/pocketfinder/ CASTP -http://sts-fw.bioengr.uic.edu/castp/calculation.php
This help in predicting the active site cavity area... Thanking you, regards, P.P.Karthikeyan. ------------------ P.P.Karthikeyan, http://ppkarthikeyan.googlepages.com/ http://iscbsc.org/rsg/rsg-india/ 2009/7/21 Dan Bolser <[email protected]> > You could try asking on PDB-L > > > I keep a list of mailing lists here: > > http://biodatabase.org/index.php/List_of_mailing_lists_for_biologists > > > Dan. > > 2009/7/20 Mike Marchywka <[email protected]>: > > > > ---------------------------------------- > >> Date: Thu, 16 Jul 2009 23:33:54 -0700 > >> From: [email protected] > >> To: [email protected] > >> Subject: [BiO BB] size of cavity > >> > >> Dear all, > >> > >> I am looking for the online tool or program to calculate the volume of > the cavity in a given protein structure. > >> > > > > I don't know about online but if you can't find what you need and can > > play with a glut demo program, I've used this for outlining cavities, > > > > http://www.spottext.com/marchywka/glutp/docs_surfaces.html > > > > shouldn't be hard to find volume. Also try a search on wikipedia.org, > > they have some good "list of molecular related software" pages. > > > >> Thanks & regards, > >> > >> NIKHIL S. GADEWAL > >> ACTREC, > >> Tata Memorial Centre, > >> Kharghar, > >> Navi Mumbai, > >> India > > _______________________________________________ > BBB mailing list > [email protected] > http://www.bioinformatics.org/mailman/listinfo/bbb > _______________________________________________ BBB mailing list [email protected] http://www.bioinformatics.org/mailman/listinfo/bbb
