---------- Forwarded message ---------- From: Limin Fu <[email protected]> Date: 5 April 2010 19:24 Subject: Re: [CD-HIT] Fwd: [BiO BB] CD-HIT Support Request To: Dan Bolser <[email protected]> Cc: [email protected]
Hi, The warnings from perl scripts are harmless. The critical errors are results of improper command line arguments. cd_hit_2d.exe is supposed to work on two sequence datasets of fasta format, to cluster one dataset against the other. In this error report, *.clstr files are used as input files, which contain no sequence data, that's the cause of the errors. Regards, Limin On Sun, Apr 4, 2010 at 3:20 PM, Dan Bolser <[email protected]> wrote: > > ---------- Forwarded message ---------- > From: Silas Labedo <[email protected]> > Date: 12 March 2010 07:10 > Subject: [BiO BB] CD-HIT Support Request > To: [email protected], [email protected] > Cc: Edwin Mulwa <[email protected]>, Patrick Njuguna > Njogu <[email protected]>, "[email protected]" > <[email protected]> > > > Hi Everyone, > > I am writing a clustering program in java that calls cd-hit for New, > Incremental, and Hierarchical clustering. The program works fine for > New clustering, however when I attempt to call cd-hit from within the > java code for Incremental clustering, I get errors. The error logs are > attached below. 3 different errors occured that I don't understand and > are the reason for which I am seeking your assistance. > > This error occurred when trying to execute cd-hit for hierarchical > clustering from the linux command prompt. > **************************************************************************************** > [r...@ip-10-194-215-223 cd-hit]# ./psi-cd-hit-local.pl -i > hierarchical93 -o hierarchical90 -c 0.90 > Name "main::formatdb_no" used only once: possible typo at > ./psi-cd-hit-local.pl line 1712. > Name "main::known_singles" used only once: possible typo at > ./psi-cd-hit-local.pl line 1873. > Name "main::longest_ide" used only once: possible typo at > ./psi-cd-hit-local.pl line 966. > Name "main::known_single" used only once: possible typo at > ./psi-cd-hit-local.pl line 1873. > [r...@ip-10-194-215-223 cd-hit]# > > > [r...@ip-10-194-215-223 cd-hit]# perl psi-cd-hit.pl -i hierarchical93 > -o hierarchical90 -c 0.3 > Name "main::reformat_seg" used only once: possible typo at > psi-cd-hit.pl line 65. > Name "main::restart_seg" used only once: possible typo at psi-cd-hit.pl line > 62. > Can't exec "formatdb": No such file or directory at > .//psi-cd-hit-local.pl line 1723. > Can not formatdb at .//psi-cd-hit-local.pl line 1724. > [r...@ip-10-194-215-223 cd-hit]# vi hierarchical90.log > [r...@ip-10-194-215-223 cd-hit]# vi hierarchical90.out > [r...@ip-10-194-215-223 cd-hit]# > > > The following outputs and subsequent errors occurred during > incremental clustering executed from within a java code. > **************************************************************************************** > Cluster CMD: C:\cd-hit-windows\cd_hit_2d.exe -i "C:/cluster > files/unipath_2010-3-9.clstr" -i2 "c:/cluster > files/unipath_2010-3-9.fasta" -o "C:/cluster files/unipath_2010-3-9" > -c 0.9 -n 5 -d 50 > > Mar 9, 2010 6:55:31 AM Here is the standard output of the command: > > total seq in db1: 0 > total seq in db2: 15732 > longest and shortest : 0 and 99999999 > Total letters: 0 > Mar 9, 2010 6:55:57 AM Process Exit Value : 1 > Mar 9, 2010 6:55:57 AM Here is the standard error of the command (if any): > > > Fatal Error > Memory > > Program halted !! > > ************************************************************************************** > Cluster CMD: C:\cd-hit-windows\cd_hit_2d.exe -i "C:/cluster > files/clusteroutput.clstr" -i2 "c:/cluster files/aric_2010-3-10.fasta" > -o "C:/cluster files/aric_2010-3-10" -c 0.9 -n 5 -d 50 > > Mar 10, 2010 6:51:01 AM Here is the standard output of the command: > > total seq in db1: 79 > total seq in db2: 4776 > longest and shortest : 48 and 11 > Total letters: 1061 > Sequences have been sorted > longest and shortest : 34350 and 11 > Total letters: 3167574 > compute index table for first database > Reading swap > Comparing with SEG 0 > ..........1000 compared 0 clustered > ..........2000 compared 0 clustered > ..........3000 compared 0 clustered > ..........4000 compared 0 clustered > ....... > 4776 compared 0 clustered > writing non-redundant sequences from db2 > writing clustering information > program completed ! > > Total CPU time 103 > Mar 10, 2010 6:51:23 AM Process Exit Value : 0 > Mar 10, 2010 6:51:23 AM Here is the standard error of the command (if any): > > > The attached fasta file was generated along with the last part of the > output/error log. The contents of the fasta file are very un-familiar > and I would be very grateful if someone can help me understand it. > Thanks you all. > Regards. > > >Cluster 0 > 0 56aa, >Cluster 498... * > >Cluster 1 > 0 49aa, >Cluster 6436... * > >Cluster 2 > 0 40aa, >Cluster 1087... * > >Cluster 3 > 0 40aa, >Cluster 7998... * > >Cluster 4 > 0 39aa, >Cluster 6718... * > >Cluster 5 > 0 38aa, >Cluster 1072... * > >Cluster 6 > 0 35aa, >Cluster 14402... * > >Cluster 7 > 0 34aa, >Cluster 8584... * > >Cluster 8 > 0 29aa, >Cluster 1243... * > >Cluster 9 > 0 29aa, >Cluster 3934... * > >Cluster 10 > 0 27aa, >Cluster 1175... * > >Cluster 11 > 0 26aa, >Cluster 2224... * > >Cluster 12 > 0 26aa, >Cluster 2997... * > >Cluster 13 > 0 26aa, >Cluster 13025... * > >Cluster 14 > 0 25aa, >Cluster 70... * > >Cluster 15 > 0 25aa, >Cluster 3729... * > >Cluster 16 > 0 24aa, >Cluster 3642... * > >Cluster 17 > 0 24aa, >Cluster 7403... * > >Cluster 18 > 0 22aa, >Cluster 371... * > >Cluster 19 > 0 22aa, >Cluster 942... * > >Cluster 20 > 0 22aa, >Cluster 1057... * > >Cluster 21 > 0 22aa, >Cluster 4995... * > >Cluster 22 > 0 22aa, >Cluster 11970... * > >Cluster 23 > 0 21aa, >Cluster 1454... * > >Cluster 24 > 0 21aa, >Cluster 6057... * > >Cluster 25 > 0 21aa, >Cluster 6809... * > >Cluster 26 > 0 21aa, >Cluster 10858... * > >Cluster 27 > 0 21aa, >Cluster 13091... * > >Cluster 28 > 0 21aa, >Cluster 13503... * > >Cluster 29 > 0 20aa, >Cluster 418... * > >Cluster 30 > 0 20aa, >Cluster 918... * > >Cluster 31 > 0 20aa, >Cluster 1299... * > >Cluster 32 > 0 20aa, >Cluster 1436... * > >Cluster 33 > 0 20aa, >Cluster 4225... * > >Cluster 34 > 0 20aa, >Cluster 7553... * > >Cluster 35 > 0 20aa, >Cluster 7894... * > >Cluster 36 > 0 19aa, >Cluster 123... * > >Cluster 37 > 0 19aa, >Cluster 529... * > >Cluster 38 > 0 19aa, >Cluster 633... * > >Cluster 39 > 0 19aa, >Cluster 861... * > >Cluster 40 > 0 19aa, >Cluster 890... * > >Cluster 41 > 0 19aa, >Cluster 1519... * > >Cluster 42 > 0 19aa, >Cluster 2298... * > >Cluster 43 > 0 19aa, >Cluster 8244... * > >Cluster 44 > 0 19aa, >Cluster 8906... * > >Cluster 45 > 0 18aa, >Cluster 2199... * > >Cluster 46 > 0 18aa, >Cluster 2271... * > >Cluster 47 > 0 18aa, >Cluster 5824... * > >Cluster 48 > 0 18aa, >Cluster 5961... * > >Cluster 49 > 0 18aa, >Cluster 6518... * > >Cluster 50 > 0 18aa, >Cluster 7567... * > >Cluster 51 > 0 18aa, >Cluster 10920... * > >Cluster 52 > 0 18aa, >Cluster 11850... * > >Cluster 53 > 0 18aa, >Cluster 12368... * > >Cluster 54 > 0 17aa, >Cluster 279... * > >Cluster 55 > 0 17aa, >Cluster 780... * > >Cluster 56 > 0 17aa, >Cluster 3123... * > >Cluster 57 > 0 17aa, >Cluster 4123... * > >Cluster 58 > 0 17aa, >Cluster 9534... * > >Cluster 59 > 0 17aa, >Cluster 9544... * > >Cluster 60 > 0 17aa, >Cluster 11848... * > >Cluster 61 > 0 16aa, >Cluster 319... * > >Cluster 62 > 0 16aa, >Cluster 1228... * > >Cluster 63 > 0 16aa, >Cluster 4469... * > >Cluster 64 > 0 16aa, >Cluster 7761... * > >Cluster 65 > 0 15aa, >Cluster 2470... * > >Cluster 66 > 0 15aa, >Cluster 5485... * > >Cluster 67 > 0 15aa, >Cluster 9036... * > >Cluster 68 > 0 14aa, >Cluster 16... * > >Cluster 69 > 0 14aa, >Cluster 198... * > >Cluster 70 > 0 14aa, >Cluster 252... * > >Cluster 71 > 0 14aa, >Cluster 292... * > >Cluster 72 > 0 14aa, >Cluster 364... * > >Cluster 73 > 0 14aa, >Cluster 657... * > >Cluster 74 > 0 14aa, >Cluster 670... * > >Cluster 75 > 0 14aa, >Cluster 770... * > >Cluster 76 > 0 14aa, >Cluster 869... * > >Cluster 77 > 0 14aa, >Cluster 900... * > >Cluster 78 > 0 14aa, >Cluster 962... * > >Cluster 79 > 0 14aa, >Cluster 1137... * > >Cluster 80 > 0 14aa, >Cluster 1165... * > >Cluster 81 > 0 14aa, >Cluster 1230... * > >Cluster 82 > 0 14aa, >Cluster 1273... * > >Cluster 83 > 0 14aa, >Cluster 1659... * > >Cluster 84 > 0 14aa, >Cluster 2038... * > >Cluster 85 > 0 14aa, >Cluster 2318... * > >Cluster 86 > 0 14aa, >Cluster 2432... * > >Cluster 87 > 0 14aa, >Cluster 2651... * > >Cluster 88 > 0 14aa, >Cluster 2745... * > >Cluster 89 > 0 14aa, >Cluster 2767... * > >Cluster 90 > 0 14aa, >Cluster 2874... * > >Cluster 91 > 0 14aa, >Cluster 2904... * > >Cluster 92 > 0 14aa, >Cluster 3079... * > >Cluster 93 > 0 14aa, >Cluster 3091... * > >Cluster 94 > 0 14aa, >Cluster 3354... * > >Cluster 95 > 0 14aa, >Cluster 3400... * > >Cluster 96 > 0 14aa, >Cluster 3565... * > >Cluster 97 > 0 14aa, >Cluster 3884... * > >Cluster 98 > 0 14aa, >Cluster 3987... * > >Cluster 99 > 0 14aa, >Cluster 4079... * > >Cluster 100 > 0 14aa, >Cluster 4244... * > >Cluster 101 > 0 14aa, >Cluster 4350... * > >Cluster 102 > 0 14aa, >Cluster 4593... * > >Cluster 103 > 0 14aa, >Cluster 4601... * > >Cluster 104 > 0 14aa, >Cluster 4880... * > >Cluster 105 > 0 14aa, >Cluster 5149... * > >Cluster 106 > 0 14aa, >Cluster 5329... * > >Cluster 107 > 0 14aa, >Cluster 5677... * > >Cluster 108 > 0 14aa, >Cluster 5857... * > >Cluster 109 > 0 14aa, >Cluster 6106... * > >Cluster 110 > 0 14aa, >Cluster 6232... * > >Cluster 111 > 0 14aa, >Cluster 6306... * > >Cluster 112 > 0 14aa, >Cluster 6349... * > >Cluster 113 > 0 14aa, >Cluster 6355... * > >Cluster 114 > 0 14aa, >Cluster 6630... * > >Cluster 115 > 0 14aa, >Cluster 6805... * > >Cluster 116 > 0 14aa, >Cluster 9161... * > >Cluster 117 > 0 14aa, >Cluster 9297... * > >Cluster 118 > 0 14aa, >Cluster 9795... * > >Cluster 119 > 0 14aa, >Cluster 9942... * > >Cluster 120 > 0 14aa, >Cluster 10169... * > >Cluster 121 > 0 14aa, >Cluster 10709... * > >Cluster 122 > 0 14aa, >Cluster 10761... * > >Cluster 123 > 0 14aa, >Cluster 11147... * > >Cluster 124 > 0 14aa, >Cluster 11626... * > >Cluster 125 > 0 14aa, >Cluster 11637... * > >Cluster 126 > 0 14aa, >Cluster 13122... * > >Cluster 127 > 0 14aa, >Cluster 13790... * > >Cluster 128 > 0 14aa, >Cluster 14731... * > >Cluster 129 > 0 13aa, >Cluster 2... * > >Cluster 130 > 0 13aa, >Cluster 8... * > >Cluster 131 > 0 13aa, >Cluster 100... * > >Cluster 132 > 0 13aa, >Cluster 109... * > >Cluster 133 > 0 13aa, >Cluster 121... * > >Cluster 134 > 0 13aa, >Cluster 136... * > >Cluster 135 > 0 13aa, >Cluster 167... * > >Cluster 136 > 0 13aa, >Cluster 176... * > >Cluster 137 > 0 13aa, >Cluster 196... * > >Cluster 138 > 0 13aa, >Cluster 231... * > >Cluster 139 > 0 13aa, >Cluster 232... * > >Cluster 140 > 0 13aa, >Cluster 277... * > >Cluster 141 > 0 13aa, >Cluster 310... * > >Cluster 142 > 0 13aa, >Cluster 323... * > >Cluster 143 > 0 13aa, >Cluster 347... * > >Cluster 144 > 0 13aa, >Cluster 392... * > >Cluster 145 > 0 13aa, >Cluster 420... * > >Cluster 146 > 0 13aa, >Cluster 431... * > >Cluster 147 > 0 13aa, >Cluster 460... * > >Cluster 148 > 0 13aa, >Cluster 520... * > >Cluster 149 > 0 13aa, >Cluster 573... * > >Cluster 150 > 0 13aa, >Cluster 590... * > >Cluster 151 > 0 13aa, >Cluster 594... * > >Cluster 152 > 0 13aa, >Cluster 618... * > >Cluster 153 > 0 13aa, >Cluster 688... * > >Cluster 154 > 0 13aa, >Cluster 803... * > >Cluster 155 > 0 13aa, >Cluster 805... * > >Cluster 156 > 0 13aa, >Cluster 815... * > >Cluster 157 > 0 13aa, >Cluster 832... * > >Cluster 158 > 0 13aa, >Cluster 837... * > >Cluster 159 > 0 13aa, >Cluster 913... * > >Cluster 160 > 0 13aa, >Cluster 940... * > >Cluster 161 > 0 13aa, >Cluster 945... * > >Cluster 162 > 0 13aa, >Cluster 970... * > >Cluster 163 > 0 13aa, >Cluster 1013... * > >Cluster 164 > 0 13aa, >Cluster 1034... * > >Cluster 165 > 0 13aa, >Cluster 1035... * > >Cluster 166 > 0 13aa, >Cluster 1086... * > >Cluster 167 > 0 13aa, >Cluster 1151... * > >Cluster 168 > 0 13aa, >Cluster 1162... * > >Cluster 169 > 0 13aa, >Cluster 1218... * > >Cluster 170 > 0 13aa, >Cluster 1253... * > >Cluster 171 > 0 13aa, >Cluster 1265... * > >Cluster 172 > 0 13aa, >Cluster 1341... * > >Cluster 173 > 0 13aa, >Cluster 1350... * > >Cluster 174 > 0 13aa, >Cluster 1352... * > >Cluster 175 > 0 13aa, >Cluster 1357... * > >Cluster 176 > 0 13aa, >Cluster 1443... * > >Cluster 177 > 0 13aa, >Cluster 1499... * > >Cluster 178 > 0 13aa, >Cluster 1653... * > >Cluster 179 > 0 13aa, >Cluster 1806... * > >Cluster 180 > 0 13aa, >Cluster 1861... * > >Cluster 181 > 0 13aa, >Cluster 1893... * > >Cluster 182 > 0 13aa, >Cluster 1905... * > >Cluster 183 > 0 13aa, >Cluster 1927... * > >Cluster 184 > 0 13aa, >Cluster 1942... * > >Cluster 185 > 0 13aa, >Cluster 2079... * > >Cluster 186 > 0 13aa, >Cluster 2313... * > >Cluster 187 > 0 13aa, >Cluster 2320... * > >Cluster 188 > 0 13aa, >Cluster 2332... * > >Cluster 189 > 0 13aa, >Cluster 2381... * > >Cluster 190 > 0 13aa, >Cluster 2391... * > >Cluster 191 > 0 13aa, >Cluster 2472... * > >Cluster 192 > 0 13aa, >Cluster 2486... * > >Cluster 193 > 0 13aa, >Cluster 2489... * > >Cluster 194 > 0 13aa, >Cluster 2516... * > >Cluster 195 > 0 13aa, >Cluster 2577... * > >Cluster 196 > 0 13aa, >Cluster 2608... * > >Cluster 197 > 0 13aa, >Cluster 2613... * > >Cluster 198 > 0 13aa, >Cluster 2634... * > >Cluster 199 > 0 13aa, >Cluster 2803... * > >Cluster 200 > 0 13aa, >Cluster 2805... * > >Cluster 201 > 0 13aa, >Cluster 2898... * > >Cluster 202 > 0 13aa, >Cluster 2949... * > >Cluster 203 > 0 13aa, >Cluster 2982... * > >Cluster 204 > 0 13aa, >Cluster 2987... * > >Cluster 205 > 0 13aa, >Cluster 3014... * > >Cluster 206 > 0 13aa, >Cluster 3065... * > >Cluster 207 > 0 13aa, >Cluster 3151... * > >Cluster 208 > 0 13aa, >Cluster 3197... * > >Cluster 209 > 0 13aa, >Cluster 3215... * > >Cluster 210 > 0 13aa, >Cluster 3280... * > >Cluster 211 > 0 13aa, >Cluster 3388... * > >Cluster 212 > 0 13aa, >Cluster 3492... * > >Cluster 213 > 0 13aa, >Cluster 3527... * > >Cluster 214 > 0 13aa, >Cluster 3531... * > >Cluster 215 > 0 13aa, >Cluster 3583... * > >Cluster 216 > 0 13aa, >Cluster 3685... * > >Cluster 217 > 0 13aa, >Cluster 3732... * > >Cluster 218 > 0 13aa, >Cluster 3735... * > >Cluster 219 > 0 13aa, >Cluster 3740... * > >Cluster 220 > 0 13aa, >Cluster 3977... * > >Cluster 221 > 0 13aa, >Cluster 4004... * > >Cluster 222 > 0 13aa, >Cluster 4115... * > >Cluster 223 > 0 13aa, >Cluster 4119... * > >Cluster 224 > 0 13aa, >Cluster 4139... * > >Cluster 225 > 0 13aa, >Cluster 4181... * > >Cluster 226 > 0 13aa, >Cluster 4184... * > >Cluster 227 > 0 13aa, >Cluster 4195... * > >Cluster 228 > 0 13aa, >Cluster 4243... * > >Cluster 229 > 0 13aa, >Cluster 4247... * > >Cluster 230 > 0 13aa, >Cluster 4324... * > >Cluster 231 > 0 13aa, >Cluster 4331... * > >Cluster 232 > 0 13aa, >Cluster 4377... * > >Cluster 233 > 0 13aa, >Cluster 4426... * > >Cluster 234 > 0 13aa, >Cluster 4587... * > >Cluster 235 > 0 13aa, >Cluster 4594... * > >Cluster 236 > 0 13aa, >Cluster 4671... * > >Cluster 237 > 0 13aa, >Cluster 4740... * > >Cluster 238 > 0 13aa, >Cluster 5015... * > >Cluster 239 > 0 13aa, >Cluster 5091... * > >Cluster 240 > 0 13aa, >Cluster 5102... * > >Cluster 241 > 0 13aa, >Cluster 5182... * > >Cluster 242 > 0 13aa, >Cluster 5217... * > >Cluster 243 > 0 13aa, >Cluster 5354... * > >Cluster 244 > 0 13aa, >Cluster 5360... * > >Cluster 245 > 0 13aa, >Cluster 5602... * > >Cluster 246 > 0 13aa, >Cluster 5642... * > >Cluster 247 > 0 13aa, >Cluster 5682... * > >Cluster 248 > 0 13aa, >Cluster 5693... * > >Cluster 249 > 0 13aa, >Cluster 5844... * > >Cluster 250 > 0 13aa, >Cluster 6013... * > >Cluster 251 > 0 13aa, >Cluster 6099... * > >Cluster 252 > 0 13aa, >Cluster 6100... * > >Cluster 253 > 0 13aa, >Cluster 6121... * > >Cluster 254 > 0 13aa, >Cluster 6154... * > >Cluster 255 > 0 13aa, >Cluster 6176... * > >Cluster 256 > 0 13aa, >Cluster 6249... * > >Cluster 257 > 0 13aa, >Cluster 6348... * > >Cluster 258 > 0 13aa, >Cluster 6361... * > >Cluster 259 > 0 13aa, >Cluster 6364... * > >Cluster 260 > 0 13aa, >Cluster 6502... * > >Cluster 261 > 0 13aa, >Cluster 6657... * > >Cluster 262 > 0 13aa, >Cluster 6709... * > >Cluster 263 > 0 13aa, >Cluster 6727... * > >Cluster 264 > 0 13aa, >Cluster 6851... * > >Cluster 265 > 0 13aa, >Cluster 6870... * > >Cluster 266 > 0 13aa, >Cluster 6914... * > >Cluster 267 > 0 13aa, >Cluster 7252... * > >Cluster 268 > 0 13aa, >Cluster 7419... * > >Cluster 269 > 0 13aa, >Cluster 7426... * > >Cluster 270 > 0 13aa, >Cluster 7528... * > >Cluster 271 > 0 13aa, >Cluster 7590... * > >Cluster 272 > 0 13aa, >Cluster 8112... * > >Cluster 273 > 0 13aa, >Cluster 8129... * > >Cluster 274 > 0 13aa, >Cluster 8157... * > >Cluster 275 > 0 13aa, >Cluster 8261... * > >Cluster 276 > 0 13aa, >Cluster 8531... * > >Cluster 277 > 0 13aa, >Cluster 8808... * > >Cluster 278 > 0 13aa, >Cluster 8840... * > >Cluster 279 > 0 13aa, >Cluster 8985... * > >Cluster 280 > 0 13aa, >Cluster 9186... * > >Cluster 281 > 0 13aa, >Cluster 9201... * > >Cluster 282 > 0 13aa, >Cluster 9268... * > >Cluster 283 > 0 13aa, >Cluster 9354... * > >Cluster 284 > 0 13aa, >Cluster 9356... * > >Cluster 285 > 0 13aa, >Cluster 9538... * > >Cluster 286 > 0 13aa, >Cluster 9675... * > >Cluster 287 > 0 13aa, >Cluster 9692... * > >Cluster 288 > 0 13aa, >Cluster 9695... * > >Cluster 289 > 0 13aa, >Cluster 9746... * > >Cluster 290 > 0 13aa, >Cluster 9769... * > >Cluster 291 > 0 13aa, >Cluster 9814... * > >Cluster 292 > 0 13aa, >Cluster 10011... * > >Cluster 293 > 0 13aa, >Cluster 10214... * > >Cluster 294 > 0 13aa, >Cluster 10251... * > >Cluster 295 > 0 13aa, >Cluster 10361... * > >Cluster 296 > 0 13aa, >Cluster 10450... * > >Cluster 297 > 0 13aa, >Cluster 10518... * > >Cluster 298 > 0 13aa, >Cluster 10648... * > >Cluster 299 > 0 13aa, >Cluster 10962... * > >Cluster 300 > 0 13aa, >Cluster 11121... * > >Cluster 301 > 0 13aa, >Cluster 11151... * > >Cluster 302 > 0 13aa, >Cluster 11519... * > >Cluster 303 > 0 13aa, >Cluster 11632... * > >Cluster 304 > 0 13aa, >Cluster 11867... * > >Cluster 305 > 0 13aa, >Cluster 11976... * > >Cluster 306 > 0 13aa, >Cluster 12006... * > >Cluster 307 > 0 13aa, >Cluster 12197... * > >Cluster 308 > 0 13aa, >Cluster 12363... * > >Cluster 309 > 0 13aa, >Cluster 13957... * > >Cluster 310 > 0 12aa, >Cluster 40... * > >Cluster 311 > 0 12aa, >Cluster 51... * > >Cluster 312 > 0 12aa, >Cluster 59... * > >Cluster 313 > 0 12aa, >Cluster 61... * > >Cluster 314 > 0 12aa, >Cluster 69... * > >Cluster 315 > 0 12aa, >Cluster 72... * > >Cluster 316 > 0 12aa, >Cluster 111... * > >Cluster 317 > 0 12aa, >Cluster 116... * > >Cluster 318 > 0 12aa, >Cluster 126... * > >Cluster 319 > 0 12aa, >Cluster 195... * > >Cluster 320 > 0 12aa, >Cluster 283... * > >Cluster 321 > 0 12aa, >Cluster 346... * > >Cluster 322 > 0 12aa, >Cluster 384... * > >Cluster 323 > 0 12aa, >Cluster 394... * > >Cluster 324 > 0 12aa, >Cluster 406... * > >Cluster 325 > 0 12aa, >Cluster 416... * > >Cluster 326 > 0 12aa, >Cluster 419... * > >Cluster 327 > 0 12aa, >Cluster 426... * > >Cluster 328 > 0 12aa, >Cluster 489... * > >Cluster 329 > 0 12aa, >Cluster 522... * > >Cluster 330 > 0 12aa, >Cluster 674... * > >Cluster 331 > 0 12aa, >Cluster 677... * > >Cluster 332 > 0 12aa, >Cluster 808... * > >Cluster 333 > 0 12aa, >Cluster 947... * > >Cluster 334 > 0 12aa, >Cluster 1015... * > >Cluster 335 > 0 12aa, >Cluster 1053... * > >Cluster 336 > 0 12aa, >Cluster 1085... * > >Cluster 337 > 0 12aa, >Cluster 1125... * > >Cluster 338 > 0 12aa, >Cluster 1154... * > >Cluster 339 > 0 12aa, >Cluster 1235... * > >Cluster 340 > 0 12aa, >Cluster 1264... * > >Cluster 341 > 0 12aa, >Cluster 1296... * > >Cluster 342 > 0 12aa, >Cluster 1314... * > >Cluster 343 > 0 12aa, >Cluster 1385... * > >Cluster 344 > 0 12aa, >Cluster 1451... * > >Cluster 345 > 0 12aa, >Cluster 1462... * > >Cluster 346 > 0 12aa, >Cluster 1479... * > >Cluster 347 > 0 12aa, >Cluster 1541... * > >Cluster 348 > 0 12aa, >Cluster 1610... * > >Cluster 349 > 0 12aa, >Cluster 1663... * > >Cluster 350 > 0 12aa, >Cluster 1672... * > >Cluster 351 > 0 12aa, >Cluster 1703... * > >Cluster 352 > 0 12aa, >Cluster 1817... * > >Cluster 353 > 0 12aa, >Cluster 1911... * > >Cluster 354 > 0 12aa, >Cluster 1965... * > >Cluster 355 > 0 12aa, >Cluster 2051... * > >Cluster 356 > 0 12aa, >Cluster 2151... * > >Cluster 357 > 0 12aa, >Cluster 2212... * > >Cluster 358 > 0 12aa, >Cluster 2236... * > >Cluster 359 > 0 12aa, >Cluster 2323... * > >Cluster 360 > 0 12aa, >Cluster 2530... * > >Cluster 361 > 0 12aa, >Cluster 2555... * > >Cluster 362 > 0 12aa, >Cluster 2620... * > >Cluster 363 > 0 12aa, >Cluster 2706... * > >Cluster 364 > 0 12aa, >Cluster 2755... * > >Cluster 365 > 0 12aa, >Cluster 2818... * > >Cluster 366 > 0 12aa, >Cluster 2824... * > >Cluster 367 > 0 12aa, >Cluster 2870... * > >Cluster 368 > 0 12aa, >Cluster 2910... * > >Cluster 369 > 0 12aa, >Cluster 3140... * > >Cluster 370 > 0 12aa, >Cluster 3213... * > >Cluster 371 > 0 12aa, >Cluster 3285... * > >Cluster 372 > 0 12aa, >Cluster 3364... * > >Cluster 373 > 0 12aa, >Cluster 3374... * > >Cluster 374 > 0 12aa, >Cluster 3603... * > >Cluster 375 > 0 12aa, >Cluster 3663... * > >Cluster 376 > 0 12aa, >Cluster 3692... * > >Cluster 377 > 0 12aa, >Cluster 3833... * > >Cluster 378 > 0 12aa, >Cluster 3940... * > >Cluster 379 > 0 12aa, >Cluster 4081... * > >Cluster 380 > 0 12aa, >Cluster 4224... * > >Cluster 381 > 0 12aa, >Cluster 4252... * > >Cluster 382 > 0 12aa, >Cluster 4274... * > >Cluster 383 > 0 12aa, >Cluster 4333... * > >Cluster 384 > 0 12aa, >Cluster 4364... * > >Cluster 385 > 0 12aa, >Cluster 4402... * > >Cluster 386 > 0 12aa, >Cluster 4427... * > >Cluster 387 > 0 12aa, >Cluster 4511... * > >Cluster 388 > 0 12aa, >Cluster 4548... * > >Cluster 389 > 0 12aa, >Cluster 4575... * > >Cluster 390 > 0 12aa, >Cluster 4586... * > >Cluster 391 > 0 12aa, >Cluster 4604... * > >Cluster 392 > 0 12aa, >Cluster 4637... * > >Cluster 393 > 0 12aa, >Cluster 5204... * > >Cluster 394 > 0 12aa, >Cluster 5398... * > >Cluster 395 > 0 12aa, >Cluster 5455... * > >Cluster 396 > 0 12aa, >Cluster 5515... * > >Cluster 397 > 0 12aa, >Cluster 5662... * > >Cluster 398 > 0 12aa, >Cluster 5683... * > >Cluster 399 > 0 12aa, >Cluster 5698... * > >Cluster 400 > 0 12aa, >Cluster 5789... * > >Cluster 401 > 0 12aa, >Cluster 5882... * > >Cluster 402 > 0 12aa, >Cluster 5989... * > >Cluster 403 > 0 12aa, >Cluster 6056... * > >Cluster 404 > 0 12aa, >Cluster 6060... * > >Cluster 405 > 0 12aa, >Cluster 6088... * > >Cluster 406 > 0 12aa, >Cluster 6297... * > >Cluster 407 > 0 12aa, >Cluster 6421... * > >Cluster 408 > 0 12aa, >Cluster 6479... * > >Cluster 409 > 0 12aa, >Cluster 6650... * > >Cluster 410 > 0 12aa, >Cluster 6798... * > >Cluster 411 > 0 12aa, >Cluster 6965... * > >Cluster 412 > 0 12aa, >Cluster 6967... * > >Cluster 413 > 0 12aa, >Cluster 7022... * > >Cluster 414 > 0 12aa, >Cluster 7043... * > >Cluster 415 > 0 12aa, >Cluster 7622... * > >Cluster 416 > 0 12aa, >Cluster 7690... * > >Cluster 417 > 0 12aa, >Cluster 7847... * > >Cluster 418 > 0 12aa, >Cluster 7849... * > >Cluster 419 > 0 12aa, >Cluster 7962... * > >Cluster 420 > 0 12aa, >Cluster 7987... * > >Cluster 421 > 0 12aa, >Cluster 8026... * > >Cluster 422 > 0 12aa, >Cluster 8081... * > >Cluster 423 > 0 12aa, >Cluster 8084... * > >Cluster 424 > 0 12aa, >Cluster 8198... * > >Cluster 425 > 0 12aa, >Cluster 8275... * > >Cluster 426 > 0 12aa, >Cluster 8546... * > >Cluster 427 > 0 12aa, >Cluster 8563... * > >Cluster 428 > 0 12aa, >Cluster 8637... * > >Cluster 429 > 0 12aa, >Cluster 8652... * > >Cluster 430 > 0 12aa, >Cluster 8806... * > >Cluster 431 > 0 12aa, >Cluster 8845... * > >Cluster 432 > 0 12aa, >Cluster 8996... * > >Cluster 433 > 0 12aa, >Cluster 9001... * > >Cluster 434 > 0 12aa, >Cluster 9017... * > >Cluster 435 > 0 12aa, >Cluster 9120... * > >Cluster 436 > 0 12aa, >Cluster 9183... * > >Cluster 437 > 0 12aa, >Cluster 9347... * > >Cluster 438 > 0 12aa, >Cluster 9427... * > >Cluster 439 > 0 12aa, >Cluster 9472... * > >Cluster 440 > 0 12aa, >Cluster 9661... * > >Cluster 441 > 0 12aa, >Cluster 9770... * > >Cluster 442 > 0 12aa, >Cluster 9906... * > >Cluster 443 > 0 12aa, >Cluster 9974... * > >Cluster 444 > 0 12aa, >Cluster 10101... * > >Cluster 445 > 0 12aa, >Cluster 10474... * > >Cluster 446 > 0 12aa, >Cluster 10527... * > >Cluster 447 > 0 12aa, >Cluster 10600... * > >Cluster 448 > 0 12aa, >Cluster 10750... * > >Cluster 449 > 0 12aa, >Cluster 10784... * > >Cluster 450 > 0 12aa, >Cluster 10944... * > >Cluster 451 > 0 12aa, >Cluster 10957... * > >Cluster 452 > 0 12aa, >Cluster 10999... * > >Cluster 453 > 0 12aa, >Cluster 11137... * > >Cluster 454 > 0 12aa, >Cluster 11231... * > >Cluster 455 > 0 12aa, >Cluster 11354... * > >Cluster 456 > 0 12aa, >Cluster 11475... * > >Cluster 457 > 0 12aa, >Cluster 11501... * > >Cluster 458 > 0 12aa, >Cluster 11646... * > >Cluster 459 > 0 12aa, >Cluster 11661... * > >Cluster 460 > 0 12aa, >Cluster 11738... * > >Cluster 461 > 0 12aa, >Cluster 11885... * > >Cluster 462 > 0 12aa, >Cluster 11919... * > >Cluster 463 > 0 12aa, >Cluster 12947... * > >Cluster 464 > 0 12aa, >Cluster 13014... * > >Cluster 465 > 0 12aa, >Cluster 13061... * > >Cluster 466 > 0 12aa, >Cluster 13438... * > >Cluster 467 > 0 12aa, >Cluster 13567... * > >Cluster 468 > 0 12aa, >Cluster 13784... * > >Cluster 469 > 0 12aa, >Cluster 14713... * > >Cluster 470 > 0 11aa, >Cluster 37... * > >Cluster 471 > 0 11aa, >Cluster 80... * > >Cluster 472 > 0 11aa, >Cluster 115... * > >Cluster 473 > 0 11aa, >Cluster 130... * > >Cluster 474 > 0 11aa, >Cluster 153... * > >Cluster 475 > 0 11aa, >Cluster 235... * > >Cluster 476 > 0 11aa, >Cluster 275... * > >Cluster 477 > 0 11aa, >Cluster 328... * > >Cluster 478 > 0 11aa, >Cluster 342... * > >Cluster 479 > 0 11aa, >Cluster 435... * > >Cluster 480 > 0 11aa, >Cluster 438... * > >Cluster 481 > 0 11aa, >Cluster 456... * > >Cluster 482 > 0 11aa, >Cluster 488... * > >Cluster 483 > 0 11aa, >Cluster 549... * > >Cluster 484 > 0 11aa, >Cluster 552... * > >Cluster 485 > 0 11aa, >Cluster 581... * > >Cluster 486 > 0 11aa, >Cluster 585... * > >Cluster 487 > 0 11aa, >Cluster 591... * > >Cluster 488 > 0 11aa, >Cluster 624... * > >Cluster 489 > 0 11aa, >Cluster 627... * > >Cluster 490 > 0 11aa, >Cluster 640... * > >Cluster 491 > 0 11aa, >Cluster 767... * > >Cluster 492 > 0 11aa, >Cluster 774... * > >Cluster 493 > 0 11aa, >Cluster 898... * > >Cluster 494 > 0 11aa, >Cluster 901... * > >Cluster 495 > 0 11aa, >Cluster 921... * > >Cluster 496 > 0 11aa, >Cluster 948... * > >Cluster 497 > 0 11aa, >Cluster 997... * > >Cluster 498 > 0 11aa, >Cluster 1024... * > >Cluster 499 > 0 11aa, >Cluster 1066... * > >Cluster 500 > 0 11aa, >Cluster 1077... * > >Cluster 501 > 0 11aa, >Cluster 1091... * > >Cluster 502 > 0 11aa, >Cluster 1098... * > >Cluster 503 > 0 11aa, >Cluster 1208... * > >Cluster 504 > 0 11aa, >Cluster 1337... * > >Cluster 505 > 0 11aa, >Cluster 1355... * > >Cluster 506 > 0 11aa, >Cluster 1485... * > >Cluster 507 > 0 11aa, >Cluster 1495... * > >Cluster 508 > 0 11aa, >Cluster 1735... * > >Cluster 509 > 0 11aa, >Cluster 1825... * > >Cluster 510 > 0 11aa, >Cluster 1892... * > >Cluster 511 > 0 11aa, >Cluster 1948... * > >Cluster 512 > 0 11aa, >Cluster 2031... * > >Cluster 513 > 0 11aa, >Cluster 2064... * > >Cluster 514 > 0 11aa, >Cluster 2104... * > >Cluster 515 > 0 11aa, >Cluster 2213... * > >Cluster 516 > 0 11aa, >Cluster 2325... * > >Cluster 517 > 0 11aa, >Cluster 2338... * > >Cluster 518 > 0 11aa, >Cluster 2452... * > >Cluster 519 > 0 11aa, >Cluster 2478... * > >Cluster 520 > 0 11aa, >Cluster 2501... * > >Cluster 521 > 0 11aa, >Cluster 2663... * > >Cluster 522 > 0 11aa, >Cluster 2671... * > >Cluster 523 > 0 11aa, >Cluster 2691... * > >Cluster 524 > 0 11aa, >Cluster 2735... * > >Cluster 525 > 0 11aa, >Cluster 2825... * > >Cluster 526 > 0 11aa, >Cluster 2837... * > >Cluster 527 > 0 11aa, >Cluster 2844... * > >Cluster 528 > 0 11aa, >Cluster 2860... * > >Cluster 529 > 0 11aa, >Cluster 2955... * > >Cluster 530 > 0 11aa, >Cluster 3074... * > >Cluster 531 > 0 11aa, >Cluster 3103... * > >Cluster 532 > 0 11aa, >Cluster 3104... * > >Cluster 533 > 0 11aa, >Cluster 3166... * > >Cluster 534 > 0 11aa, >Cluster 3174... * > >Cluster 535 > 0 11aa, >Cluster 3302... * > >Cluster 536 > 0 11aa, >Cluster 3453... * > >Cluster 537 > 0 11aa, >Cluster 3721... * > >Cluster 538 > 0 11aa, >Cluster 3723... * > >Cluster 539 > 0 11aa, >Cluster 3859... * > >Cluster 540 > 0 11aa, >Cluster 3872... * > >Cluster 541 > 0 11aa, >Cluster 3887... * > >Cluster 542 > 0 11aa, >Cluster 3910... * > >Cluster 543 > 0 11aa, >Cluster 3915... * > >Cluster 544 > 0 11aa, >Cluster 3966... * > >Cluster 545 > 0 11aa, >Cluster 4150... * > >Cluster 546 > 0 11aa, >Cluster 4240... * > >Cluster 547 > 0 11aa, >Cluster 4258... * > >Cluster 548 > 0 11aa, >Cluster 4321... * > >Cluster 549 > 0 11aa, >Cluster 4462... * > >Cluster 550 > 0 11aa, >Cluster 4557... * > >Cluster 551 > 0 11aa, >Cluster 4564... * > >Cluster 552 > 0 11aa, >Cluster 4589... * > >Cluster 553 > 0 11aa, >Cluster 4612... * > >Cluster 554 > 0 11aa, >Cluster 4617... * > >Cluster 555 > 0 11aa, >Cluster 4690... * > >Cluster 556 > 0 11aa, >Cluster 4692... * > >Cluster 557 > 0 11aa, >Cluster 4779... * > >Cluster 558 > 0 11aa, >Cluster 4906... * > >Cluster 559 > 0 11aa, >Cluster 5063... * > >Cluster 560 > 0 11aa, >Cluster 5076... * > >Cluster 561 > 0 11aa, >Cluster 5085... * > >Cluster 562 > 0 11aa, >Cluster 5170... * > >Cluster 563 > 0 11aa, >Cluster 5185... * > >Cluster 564 > 0 11aa, >Cluster 5195... * > >Cluster 565 > 0 11aa, >Cluster 5196... * > >Cluster 566 > 0 11aa, >Cluster 5254... * > >Cluster 567 > 0 11aa, >Cluster 5364... * > >Cluster 568 > 0 11aa, >Cluster 5409... * > >Cluster 569 > 0 11aa, >Cluster 5443... * > >Cluster 570 > 0 11aa, >Cluster 5476... * > >Cluster 571 > 0 11aa, >Cluster 5593... * > >Cluster 572 > 0 11aa, >Cluster 5725... * > >Cluster 573 > 0 11aa, >Cluster 5808... * > >Cluster 574 > 0 11aa, >Cluster 5869... * > >Cluster 575 > 0 11aa, >Cluster 5912... * > >Cluster 576 > 0 11aa, >Cluster 5924... * > >Cluster 577 > 0 11aa, >Cluster 6143... * > >Cluster 578 > 0 11aa, >Cluster 6147... * > >Cluster 579 > 0 11aa, >Cluster 6326... * > >Cluster 580 > 0 11aa, >Cluster 6384... * > >Cluster 581 > 0 11aa, >Cluster 6556... * > >Cluster 582 > 0 11aa, >Cluster 6764... * > >Cluster 583 > 0 11aa, >Cluster 6782... * > >Cluster 584 > 0 11aa, >Cluster 6811... * > >Cluster 585 > 0 11aa, >Cluster 6867... * > >Cluster 586 > 0 11aa, >Cluster 7160... * > >Cluster 587 > 0 11aa, >Cluster 7182... * > >Cluster 588 > 0 11aa, >Cluster 7224... * > >Cluster 589 > 0 11aa, >Cluster 7543... * > >Cluster 590 > 0 11aa, >Cluster 7550... * > >Cluster 591 > 0 11aa, >Cluster 7565... * > >Cluster 592 > 0 11aa, >Cluster 7708... * > >Cluster 593 > 0 11aa, >Cluster 7763... * > >Cluster 594 > 0 11aa, >Cluster 7965... * > >Cluster 595 > 0 11aa, >Cluster 7993... * > >Cluster 596 > 0 11aa, >Cluster 8077... * > >Cluster 597 > 0 11aa, >Cluster 8238... * > >Cluster 598 > 0 11aa, >Cluster 8301... * > >Cluster 599 > 0 11aa, >Cluster 8365... * > >Cluster 600 > 0 11aa, >Cluster 8854... * > >Cluster 601 > 0 11aa, >Cluster 9159... * > >Cluster 602 > 0 11aa, >Cluster 9176... * > >Cluster 603 > 0 11aa, >Cluster 9303... * > >Cluster 604 > 0 11aa, >Cluster 9321... * > >Cluster 605 > 0 11aa, >Cluster 9441... * > >Cluster 606 > 0 11aa, >Cluster 9469... * > >Cluster 607 > 0 11aa, >Cluster 9516... * > >Cluster 608 > 0 11aa, >Cluster 9730... * > >Cluster 609 > 0 11aa, >Cluster 9800... * > >Cluster 610 > 0 11aa, >Cluster 10147... * > >Cluster 611 > 0 11aa, >Cluster 10181... * > >Cluster 612 > 0 11aa, >Cluster 10253... * > >Cluster 613 > 0 11aa, >Cluster 10714... * > >Cluster 614 > 0 11aa, >Cluster 10968... * > >Cluster 615 > 0 11aa, >Cluster 11025... * > >Cluster 616 > 0 11aa, >Cluster 11053... * > >Cluster 617 > 0 11aa, >Cluster 11284... * > >Cluster 618 > 0 11aa, >Cluster 12381... * > >Cluster 619 > 0 11aa, >Cluster 12418... * > >Cluster 620 > 0 11aa, >Cluster 12784... * > >Cluster 621 > 0 11aa, >Cluster 13017... * > > _______________________________________________ > BBB mailing list > [email protected] > http://www.bioinformatics.org/mailman/listinfo/bbb > > _______________________________________________ > CD-HIT-l mailing list > [email protected] > http://www.bioinformatics.org/mailman/listinfo/cd-hit-l _______________________________________________ BBB mailing list [email protected] http://www.bioinformatics.org/mailman/listinfo/bbb
