Dear Nikhil,
If the authors specify the trimer in REMARK 350
in the PDB file header, you can generate it with
Michael Palmer's MakeMultimer.py server:
http://watcut.uwaterloo.ca/cgi-bin/makemultimer/
The output of MakeMultimer names each chain
differently, and all chains are placed in a
single model. This makes it easier to use, in
most common visualization software, than the
multimers generated as "biological units" at
rcsb.org, which have each chain in a separate
model, and give them all the same name (e.g. chain A).
There is an overview of methods for generating
multimers within FirstGlance in Jmol:
http://firstglance.jmol.org/notes.htm#pqs
-Eric
> On 5 October 2010 07:10, nikhil gadewal <[email protected]> wrote:
>> Dear Users,
>>
>> I would like to convert the monomer pdb structure into
>> trimer structure. Anyone know the online tool which does this job.
>>
>> Thanks in advance.
>>
>> Nikhil
/* - - - - - - - - - - - - - - - - - - - - - - - - - - -
Eric Martz, Professor Emeritus, Dept Microbiology
U Mass, Amherst -- http://Martz.MolviZ.Org
Top Five 3D MolVis Technologies http://Top5.MolviZ.Org
FirstGlance, used by Nature - http://firstglance.jmol.org
3D Wiki with Scene-Authoring Tools http://Proteopedia.Org
Biochem 3D Education Resources http://MolviZ.org
ConSurf - Find Conserved Patches in Proteins: http://consurf.tau.ac.il
Atlas of Macromolecules: http://atlas.molviz.org
Workshops: http://workshops.molviz.org
World Index of Molecular Visualization Resources: http://molvisindex.org
PDB Lite Macromolecule Finder: http://pdblite.org
Molecular Visualization EMail List (molvis-list): http://list.molviz.org
Protein Explorer - 3D Visualization: http://proteinexplorer.org
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