Hello all, I am not a student at Univ. Pitt. The following question is related to my research. I am new to computational biology and so if I may be asking a very naive question, but the information is crucial for me right now.
I would like to extract the numerical values of the base-pair probabilities from the dot plot generated by RNAfold in Vienna RNA package. According to the manual, the area of the dots are proportional to the base pair probabilities. But I am not sure this helps. Visually it gives some idea but I want to see how the base pair probabilities are affected on single point mutations of a long RNA seq ( > 500 nt long). Any help regarding this will be greatly appreciated. Thanks, Tridib _______________________________________________ BBB mailing list [email protected] http://www.bioinformatics.org/mailman/listinfo/bbb
