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BI231 NGS Data Analysis November 12-16, 2012 Online at Bioinformatics.Org http://www.bioinformatics.org/wiki/BI231_NGS_Data_Analysis http://www.bioinformatics.org/edu/AGGG -=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=- OBJECTIVES: This course teaches biologists how to analyze data from Next Generation Sequencing (NGS) platforms. Topics to be covered include the description of sequencing strategies and platforms, experiment types, data formats, and command line tools for various workflows, such as quantification of transcripts, alternative splice forms, copy number variants, single nucleotide polymorphisms, etc. INSTRUCTOR: Shailender Nagpal, M.Sc. is a data analysis consultant in the biotechnology and pharmaceutical industries and specializes in the interpretation of data generated from various platforms in drug discovery, such as genomics and proteomics. CV: http://www.bioinformatics.org/wiki/Shailender_Nagpal SYLLABUS: The course is divided into 4 sessions, with live lectures scheduled for 17:00 to 18:00 GMT (12:00 PM to 1:00 PM US EDT), Monday through Thursday (Friday will be a reserve day). Homework assignments will involve running computationally intensive tools. Recorded lectures on Linux will also be provided. Session 1: Fundamentals of NGS technologies - strategies, platforms and types of experiments that can be done (whole genome, transcriptome, targeted, ChIP-Seq, etc.) Session 2: Data formats and overview of algorithms, workflows and command line tools Session 3: Whole genome sequencing workflow used for CNV and SNP discovery Session 4: Transcriptomics workflow for quantifying abundance of transcripts and alternative splicing junctions REGISTRATION: If you haven't already done so, please create an on-line account to access the educational section of our website (http://www.bioinformatics.org/edu/). You may register for the course directly by making a payment using the on-line registration form (use this form only for PayPal and credit card payments for the base tuition listed below.): http://www.bioinformatics.org/edu/AGGG Tuition: For-profit & government: $1,000 USD Non-profit & self-pay: $600 USD Additional discounts are available as follows: * Professional members: 20% discount (please inquire) * Limited scholarships may also be available for those in low-income economies (please inquire). Additional fee: A one month subscription to our high performance Linux server: $50 lab fee. For alternative payment methods, please write to e...@bioinformatics.org. FOR MORE INFORMATION: For more information, please visit: http://www.bioinformatics.org/wiki/BI231_NGS_Data_Analysis or contact e...@bioinformatics.org. _______________________________________________ BBB mailing list BBB@bioinformatics.org http://www.bioinformatics.org/mailman/listinfo/bbb