Is there any way to change the default settings for BBEDit so that when it 
launches in as the "Diff Tool" or "Merge Tool" (compare-file mode) from Git 
Tower or other apps, it will ignore 
leading and trailing whitespace? When comparing from the 'Search' -> 'Find 
Differences' menu there are checkboxes for these settings.
Once the diff is launched I don't see any way to change them and 
recalculate the diffs.

This could be managed with a preference, or global environment variable 
before the app launches, or ideally an option click on the 'recalculate' 
button, or a checkbox that can be clicked after the app is launched.

<https://lh3.googleusercontent.com/-O0KHe9N2M2Y/VGJMtUl_LRI/AAAAAAAAACk/Wed52vRRtHs/s1600/tmp.tiff>
If there's a way to do this from the BBEdit command line tools API, it 
might be possible for me to intercept what Tower is doing to launch it, but 
I imagine that will be difficult and not survive upgrades.

This is an essential feature. Please let me know if there's a way to do it 
or if it can be added.

It would also be very valuable to have control over ignoring line ending 
differences (Unix/Mac; CR, LF, CRLF) in this context as well.
An alternative I've found is to use Kaleidoscope, which has a check box for 
this, but doesn't let you edit the files directly, so I'd have to go back 
and forth between BBEdit and Kaleidoscope, and it wouldn't work well.

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