I have a Li-Ion battery connected to BBB (A6) to supply backup power in 
case of 5V power failure. If starting with 5V connected and I remove 5V the 
board continues to run as expected with no issues. If I then re-apply 5V 
power to power connector after a short while the BBB shuts down. I assume 
it's in the OFF mode as pressing the POWER button will cause board to wake 
up.

If I start with just battery power and no 5V connected by pressing the 
POWER button to start (wake up) board then the board runs fine until I 
apply 5V power which again causes board to shutdown.

Has anyone experienced this or have any suggestions?

Thanks,
Colin

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