Thanks for responding..

I did
grep clkout2 *.dts 
in both directories and found that clkout2 didn't show up in the 3.8 but 
did show up in 3.12
in 3.12 it shows up in am335x-evm.dts and also am335x-evmsk.dts.. (and 
dove-cubox.dts but I don't think that is related)

I also just noticed that it also shows up in am335x-bone-common.dtsi, 
(3.12) which now seems more likely to be the beaglebone related file.

Here's that chunk from my device tree file..

    fragment@0 {
        target = <&am33xx_pinmux>;
        __overlay__ {
            gpmc_pins: pinmux_gpmc_pins {
                pinctrl-single,pins = <
                    /* 0x20 = Fast, RX_enabled, pullup, pullup_enable, mode 
0 */
                    0x000 0x20    /* gpmc_ad0.gpmc_ad0 MODE0 | INPUT | 
PULLUP */
                    0x004 0x20    /* gpmc_ad1.gpmc_ad1 MODE0 | INPUT | 
PULLUP */
                    0x008 0x20    /* gpmc_ad2.gpmc_ad2 MODE0 | INPUT | 
PULLUP */
                    0x00C 0x20    /* gpmc_ad3.gpmc_ad3 MODE0 | INPUT | 
PULLUP */
                    0x010 0x20    /* gpmc_ad4.gpmc_ad4 MODE0 | INPUT | 
PULLUP */
                    0x014 0x20    /* gpmc_ad5.gpmc_ad5 MODE0 | INPUT | 
PULLUP */
                    0x018 0x20    /* gpmc_ad6.gpmc_ad6 MODE0 | INPUT | 
PULLUP */
                    0x01C 0x20    /* gpmc_ad7.gpmc_ad7 MODE0 | INPUT | 
PULLUP */
                    0x020 0x20    /* gpmc_ad8.gpmc_ad8 MODE0 | INPUT | 
PULLUP */
                    0x024 0x20    /* gpmc_ad9.gpmc_ad9 MODE0 | INPUT | 
PULLUP */
                    0x028 0x20    /* gpmc_ad10.gpmc_ad10 MODE0 | INPUT | 
PULLUP */
                    0x02C 0x20    /* gpmc_ad11.gpmc_ad11 MODE0 | INPUT | 
PULLUP */
                    0x030 0x20    /* gpmc_ad12.gpmc_ad12 MODE0 | INPUT | 
PULLUP */
                    0x034 0x20    /* gpmc_ad13.gpmc_ad13 MODE0 | INPUT | 
PULLUP */
                    0x038 0x20    /* gpmc_ad14.gpmc_ad14 MODE0 | INPUT | 
PULLUP */
                    0x03C 0x20    /* gpmc_ad15.gpmc_ad15 MODE0 | INPUT | 
PULLUP */

                    0x078 0x04    /* gpmc_ben1.gpmc_dir MODE4 | OUTPUT */
                    0x080 0x00    /* gpmc_cscn1.gpmc_cscn1 MODE0 | OUTPUT */
                    0x08C 0x00    /* gpmc_clk.gpmc_clk MODE0 | OUTPUT */
                    0x090 0x00    /* gpmc_advn_ale.gpmc_advn_ale MODE0 | 
OUTPUT */
                    0x094 0x00    /* gpmc_oen_ren.gpmc_oen_ren MODE0 | 
OUTPUT */
                    0x098 0x00    /* gpmc_wen.gpmc_wen MODE0 | OUTPUT */
                    0x09C 0x00    /* gpmc_ben0_cle.gpmc_ben0_cle MODE0 | 
OUTPUT */
                    0x1b4 0x03    /* xdma_event_intr1.clkout2 MODE3 | 
OUTPUT */
                >;
            };
        };
    };

I used BB-BONE-CAM3 as a starting point but yes, I'm mostly guessing at 
what this stuff means.
My next guess is that the last line above is in the wrong section.. clkout2 
is not a gpmc pin.

I don't have any /include/ lines in my file.. just 
compatible = "ti,beaglebone", "ti,beaglebone-black";
from the CAM3 file I modified.



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