What pitfalls should I watch out for that could cause the system to hang or 
malfunction?

Not what can go wrong, but one approach to dealing with it if it does:

Our system has safety implications if it should fail. It accepts messages 
from canbus devices, outputs to a paging transmitter and to a web server, 
and accepts commands from the web server. There are safety net provisions 
both in the app itself and in the firmware of our cape. The app continually 
reports various statuses to the cape firmware. Depending on the problems 
detected, the app itself can power-cycle the paging transmitter or canbus 
power to reboot those devices via relays on the cape. Likewise, the cape 
firmware can restart just our app, or Linux, or power-cycle the entire BBB, 
depending on the perceived severity of the problem.

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