If you can stand bit-banking, the BBB has perfect resources designed 
specifically for that task.
You have 2 PRU cores (200mhz, 8k memory + 8k program + 16k shared memory 
with main CPU each)
It is perfect for bit-banging in a separate process.
You can mux the GPIO pins to the PRU for processing and store the data in 
shared memory.

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