Just in case somebody finds it useful:

The duplication has worked now!
I did it according to first stack overflow answer and the reference here:
http://elinux.org/BeagleBone_Black_Extracting_eMMC_contents

The preparation of the microSD card can only be done under a Linux 
environment - at least I did not manage to prepare it under Windows.
The root file system was now 2GB in size - although the Rev C has 4 GB.
Resizing was done exactly like in
http://blog.asiantuntijakaveri.fi/2014/05/flashing-beaglebone-black-rev-b-2gb.html

----" 
What you want to do next is resize root partition to fill entire eMMC, 
otherwise you're leaving few hunded megabytes of capacity unused and rev B 
internal 2GB eMMC is already a bit on small side for full blown Linux 
install. Below steps will of course work for SD card rootfs as well.

# Switch to root
sudo su -

# Delete and recreate root partition using entire disk
# internal eMMC is called mmcblk0 now as we don't have any SD cards 
connected
fdisk /dev/mmcblk0
# Delete partition #2 (type "d" and then "2")
# Create new partition (type "n" and hit enter four times to accept 
defaults)
# Write changes (type "w")

# Reboot so new partition table gets read
reboot

# Login again as root and resize root fs
resize2fs /dev/mmcblk0p2

 "---

Works like a charm!

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