Firstly, yes, you have to recompile your kernel on BBB to get LIRC working. 
Here's a nice howto to get your IR sending to work on BBB: 
https://thenetworkcable.wordpress.com/2014/10/18/compiling-lirc_bbb-for-ir-control-on-a-beagle-bone-black/

Cheers,
Rene

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