Okay I think I see what you are saying.  The MODE0 for GPIO3_21 is 
"mcasp0_ahclkx",  so with that beaglescript code, when I say 
"b.pinmode("P9_25",b.output)" it is outputting the results of the MODE0 
(clock generator output) and not the MODE7(GPIO output) as I had expected?

But if this were the case, in my Python ADAfruit code, I explicitly set 
that pin to GPIO, so shouldn't behave like that?

Thanks for your help, really trying to get a solid grasp on these concepts!

-Joe

On Wednesday, July 8, 2015 at 10:14:00 PM UTC-4, Gerald wrote:
>
> Take a look at the schematic. GPIO3_21 is connected to the output of a 
> clock generator. To use it you must disable the Oscillator.
>
> *Oscillator can be disabled via SW*
> *for power down modes or if*
> *GPIO3_21 needs to be used*
>
> My suggestion is to pick another pin to work with. Less headaches.
>
> Gerald
>
>
> On Wed, Jul 8, 2015 at 8:47 PM, <[email protected] <javascript:>> wrote:
>
>>
>> Hey all,
>>
>> I am pretty new to the BBB and I came across something pretty odd that I 
>> have been trying to figure out for a few hours now as I was creating a push 
>> button circuit:
>>
>> P9_25 is a GPIO pin.  I set it to input but noticed that it would not 
>> respond to my button.  After some digging I realized that the pin itself 
>> was acting funky, so I isolated it to run some tests with BB's Bonescript 
>> tutorial on GPIO digitalWrite().  I ran this code below (apologies for the 
>> sloppy picture) with the adjacent circuit configuration shown as well.  
>> Obviously, the LED should turn off, but it doesn't:
>>
>>
>>   
>> <https://lh3.googleusercontent.com/-UVZwTNBSR00/VZ3RjMNpQiI/AAAAAAAAAGM/mjWtyKl5LTw/s1600/20150708_212210.jpg>
>>  
>> <https://lh3.googleusercontent.com/-lmn1_9_NGTM/VZ3PwVv6MLI/AAAAAAAAAF4/-yVeDLNf7fY/s1600/20150708_212158.jpg>
>>
>>
>> I then tried the same tests on other pins, such as P9_26, and it worked 
>> perfectly, so that's where I'm startled.
>>
>>
>> I have two theories:
>>
>>
>> 1)  I messed with P9_25 in the past, and it is reconfigured in a weird 
>> way; if someone has this hunch, could you please perhaps inform me how to 
>> reset the pin to its original glory?
>>
>>
>> 2) The pin is busted.  Fingers crossed for #1.
>>
>>
>> If anybody has run into something similar, or has any idea what I should 
>> do, please let me know!
>>
>>
>> Thank you for you time.
>>
>>
>> -Joe
>>
>> -- 
>> For more options, visit http://beagleboard.org/discuss
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>
>
>
> -- 
> Gerald
>  
> [email protected] <javascript:>
> http://beagleboard.org/
>  

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