Hi!

I didn't use these sensors yet, but isn't it better to control the charging 
voltage by an analog input?

Anyway, you can use libpruio <http://beagleboard.org/project/libpruio/> to 
change the GPIO mode between INPUT or OUTPUT at run-time. (Your software 
has to run under root privilegues.)

You could also connect a second pin with CAP functionality to measure the 
time by hardware (without polling the GPIO state).

BR

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