I've got a project going on a Beaglebone Black, where I need the I2C2 pins 
(P9-19 and 20) to be timer inputs.  So I've commented out the i2c2 entries 
in the device tree, and have most things working.  But I can't seem to get 
to eMMC1 with this configuration.  My theory is that the cape-manager is 
confused by not being able to do the I2C scan for the eeproms on the capes 
(there are none in my setup), so does not continue on to handling the 
virtual capes.  Does anyone know how I might get beyond this? (I am using 
an old, 3.8 kernel, as had different difficulties trying to get my H/W 
setup going w/ a 4.1 kernel).

Thanks,
    Andy S.
 

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