Hey, William -

1. When I did the uname -a command, I got back a 3.8.13-bone79, FWIW. (This 
*is* Debian, correct?)
2. What do you mean by "reverse logic?" That I've miswired my transistor? 
Here's my wiring:

   - drain comes in from LED
   - gate goes to P9, pin 23 (GPIO 49)
   - source comes from GND

This is my understanding of the diagram in figure 6-2, but maybe I have it 
wrong.
3. my commands are analogous to yours, and I get no error messages. But 
whether gpio49/value contains a 0 or a 1, the LED stays on.

Thanks for bearing with me on this...

mz

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