Hi Jason,
can confirm, LED is flashing.
cd /var/lib/cloud9
root@beaglebone:/var/lib/cloud9# git clone 
https://gist.github.com/jadonk/2ecf864e1b3f250bad82c0eae12b7b64
Cloning into '2ecf864e1b3f250bad82c0eae12b7b64'...
remote: Counting objects: 84, done.
remote: Total 84 (delta 0), reused 0 (delta 0), pack-reused 84
Unpacking objects: 100% (84/84), done.
root@beaglebone:/var/lib/cloud9# cd 2ecf864e1b3f250bad82c0eae12b7b64
root@beaglebone:/var/lib/cloud9/2ecf864e1b3f250bad82c0eae12b7b64# make
CC    hello-pru.c
LD    gen/hello-pru.obj
CC    hello-pru.c
LD    gen/decay95.obj
-    Generated firmwares are : gen/hello-pru.out gen/decay95.out
root@beaglebone:/var/lib/cloud9/2ecf864e1b3f250bad82c0eae12b7b64# echo none 
> /sys/class/leds/beaglebone\:green\:usr0/trigger
root@beaglebone:/var/lib/cloud9/2ecf864e1b3f250bad82c0eae12b7b64# 
config-pin overlay cape-universala
root@beaglebone:/var/lib/cloud9/2ecf864e1b3f250bad82c0eae12b7b64# 
config-pin p9.30 pruout
root@beaglebone:/var/lib/cloud9/2ecf864e1b3f250bad82c0eae12b7b64# make run
-    copying firmware file gen/hello-pru.out to /lib/firmware/am335x-pru0-fw
/bin/sh: 1: cannot create /sys/bus/platform/drivers/pru-rproc/unbind: 
Permission denied
/bin/sh: 1: cannot create /sys/bus/platform/drivers/pru-rproc/bind: 
Permission denied
-    rebooting pru core 0
-    pru core 0 is now loaded with gen/hello-pru.out
root@beaglebone:/var/lib/cloud9/2ecf864e1b3f250bad82c0eae12b7b64#

Now I have to modify my stuff.
It looks like more simple as expected.
Think with given technique I can save the existing IO configuration in my 
loader,
modify to my needs, load firmware and start the pru. At the end I should be 
able to
set the IO configuration as it was before.
But first I want to see if the pru will do what I expect .... 

Thank you very much for the useful hints.
Kasimir 

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