I ran into the same problem. Turned out that P9_25 is reserved for audio 
even though it is colored as an "available digital" pin. To free up this 
pin for usage, modify the overlay configuration file:

nano /boot/uEnv.txt


In this file, uncomment the line that disables audio overlay:

disable_uboot_overlay_audio=1


After reboot, I can use P9_25 as intended.
 
On Wednesday, July 12, 2017 at 7:57:24 AM UTC-4, Kevin M. wrote:
>
> Hi, 
>
> I am currently using a BBB with Debian Jessie 8.8 and 4.4.x kernel 
> installed. I was trying to configure the P9_25 pin using the command 
> "config-pin P9_25 gpio_pu" but the BBB keeps throwing me the error 
>
> P9_25 pinmux file not found!
>> bash: /sys/devices/platform/ocp/ocp*P9_25_pinmux/state: No such file or 
>> directory
>>
>>
> I have loaded the cap-universal-00A0 overlay from this github page
>
> https://github.com/cdsteinkuehler/beaglebone-universal-io
>
> and I believe that it should have created a P9_25_pinmux dir in the 
> /sys/devices/platform/ocp/ which is apparently missing. 
>
> I have been working on this for a couple of days already mostly because I 
> don't know much about embedded system as I'm currently a newbie. Any help 
> would be appreciated. Thanks.
>

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