Hi, On Wednesday 01 December 2010 10:44:17 Changrong Ge wrote: > Hi, > I am quite new to this perl language-I am from biochemistry field. > Now trying to write a script for my current work but could not make it. > The idea is to calculate the composition (percentage) of amino acids in > a protein sequence. > Input is a series of fasta format (protein sequence) > output is a tab delimited format like below: > > Name A T C D N Q E ....... > protein1 0.23 0.40 0.20 ... > protein2 0.52 0.01 .... > protein3 > ......
Please go to http://perl-begin.org/ and see if any of the resources there help you. I'm not initimately familiar with the Fasta format - http://en.wikipedia.org/wiki/FASTA_format - but what should the output contain exactly? > Could somebody help me with this? I tried reading some books like perl > for bioinformatics, but still not into it. > Thanks in advance. > Changrong Regards, Shlomi Fish -- ----------------------------------------------------------------- Shlomi Fish http://www.shlomifish.org/ Original Riddles - http://www.shlomifish.org/puzzles/ <rindolf> She's a hot chick. But she smokes. <go|dfish> She can smoke as long as she's smokin'. Please reply to list if it's a mailing list post - http://shlom.in/reply . -- To unsubscribe, e-mail: beginners-unsubscr...@perl.org For additional commands, e-mail: beginners-h...@perl.org http://learn.perl.org/
