On 02/28/2016 10:27 AM, Jon Tegner wrote:
Hi,

have issues with performance on E5-2680. Each of the nodes have 2 of these 12 core CPUs on SuperMicro SuperServer 1028R-WMR (i.e., 24 cores on each node).

For one of our applications (CFD/OpenFOAM) we have noticed that the calculation runs faster using 12 cores on 4 nodes compared to when using 24 cores on 4 nodes.

In our environment we also have older AMD hardware (nodes with 4 CPUs with 12 cores each), and here we don't see these strange scaling issues.

System is CentOS-7, and communication is over FDR Infiniband. BIOS is recently updated, and hyperthreading is disabled.

Feel a bit lost here, and any hints on how to proceed with this are greatly appreciated!

Need lots more info.  What does

    numastat

report for example? Are you running openfoam in a way to enforce affinity? Do you have hugepages enabled/disabled? Is openfoam using RDMA or do you have it running IPoIB?


Thanks,

/jon
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