The issues has been resolved now, but for future reference, this is what I
did:

 * Checked out a working copy of trunk
 * Used TortoiseSVN to do an interactive-merge (it stops at each conflict to
ask me what to do) and only grabbed the revisions from my branch that
weren't merges
 * Committed the working copy as a new branch

Everything is going well now. :)

Cheers,
Mitchell Stokes (Moguri)
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