On Aug 5, 2007, at 22:02, Raheel Ahmad wrote:

> Hello,
>       I had been using BibDesk with Latex (via Textmate) and everything
> was fine … I don't know what I did recently that might have broken
> things, but now when I typeset I get undefined references for all
> cites. Textmate can auto-complete references so that's going OK and I
> even tried dragging and dropping from the cite drawer.

Unless you're using my completion command in TextMate, TM uses its own  
mechanism which is orthogonal to BibDesk.

> I get the
> error with any new bibliographies and Latex documents I create as  
> well.
>       Kinda stuck as far as troubleshooting goes. I did lose my
> preferences after a recent OS upgrade though, so maybe the default
> settings don't agree with me?
>       Any ideas what I should look for?

Preferences shouldn't have any effect.  Try a minimal example, using  
terminal to run pdflatex/bibtex/pdflatex.  Something like the  
following (typed entirely in Mail, may not compile at all).  Copy the  
log output to the list so we can see what's going on.

%%% test.tex
\documentclass{article}
\bibliographystyle{plain}
\begin{document}
This is a test.  \cite{testkey}

\bibliography{testbib}
\end{document}

%%% file testbib.bib, in the same directory as test.tex

@article{testkey,
author = "Some One"
title  = "No thing"
year   = 2007
}
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