On Feb 8, 2009, at 9:57 AM, Stephen D. Scotti wrote:

1. Young WF Jr. The incidentally discovered adrenal mass. N Engl J Med 2007;356:601–610.

2. Bovio S, Cataldi A, Reimondo G, et al. Prevalence of adrenal incidentaloma in a contemporary computerized tomography series. J Endocrinol Invest 2006;29:298–302.

3. Mansmann G, Lau J, Blak E, et al. The clinically inapparent adrenal mass: update in diagnosis and treatment. Endocr Rev 2004;25:309–340.

4. Dunnick NR, Korobkin M. Imaging of adrenal incidentalmomas. AJR Am J Roentgenol 2002;179:559–568.

5. Korobkin M. CT characterization of adrenal masses: the time has come. Radiology 2000;217:629–632.

6. Kloos RT, Gross MD, Francis IR, et al. Incidentally discovered adrenal masses.

That is an example for a paper in the scientific literature. In some instances I would just need a list of sources without footnoting from a paper. In other instances, I will have a paper or presentation (usually in Microsoft Word, Microsoft Powerpoint, sometimes in Apple Pages) that have footnote with corresponding references. I've done this all manually in the past. I would like to be able to do it using something like BibDesk or EndNote so that it is more automated. I would appreciate it if you could direct me to plug-ins, Macros, templates or FAQ's that describe how to do this.

This is an example of the AMA style, which is widely used in biomedical science. As I previously noted, there is a relatively complete AMA style template in the CiteInPages download (jhh.med.virginia.edu/main/CiteInPages). Just unzip the archive and find the AMAstyle template file. You don't have to use the rest of the files, though you may find them useful for Pages integration. Template files should go in ~/Library/Application Support/BibDesk/Templates. There have been some changes in BibDesk recently, but I think you still need to "install" a template to give it a name within BibDesk so that you can select it for export or copying. Templates are installed in Preferences > Templates. The AMAstyle template should be installed as an rtf "general template." I installed it under the name "AMA Style."

Then when I export a set of references (File > Export...), I can choose "AMA Style" as the file format they will be saved to an rtf file in the AMA format.

Alternatively, I can set the AMA Style template to be the copying and dragging template (Preferences > citations, set format to Template and the template to AMA Style). That will allow me to select one or more references in BibDesk, copy them and then paste them in AMA style directly into another program.

Finally, I can use the popup menu under the preview pane in BibDesk's window to choose "AMA Style," and selected references will be displayed in that style in the preview pane. They can be copied directly from there and pasted into other programs with formatting intact.

My AMA style template doesn't include numbers before each entry because I generally use the receiving program's list numbering feature if I want numbers. If you want to add numbers to the template, the syntax is described in the templates section of the BibDesk Wiki. RTF templates can be edited easily in TextEdit.

Feel free to contact me directly if you decide to follow this up and you have additional questions.

Jim Harrison

James H. Harrison, Jr., MD, PhD
Associate Professor and Director of Clinical Informatics
Departments of Public Health Sciences and Pathology
University of Virginia
Hospital West Complex 3181
PO Box 800717
Charlottesville, VA 22908-0717

Phone: 434-924-8054 | Fax: 434-924-8437
<[email protected]>



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