In response to the discussion around plotPCA (
https://stat.ethz.ch/pipermail/bioc-devel/2014-October/006504.html ) ,
the plotPCA generic has been added to the BiocGenerics package. We
encourage package maintainers to update their packages to use the
generic, and seek help on this list if needed.
The generic is as follows:
setGeneric("plotPCA", function(object, ...) {
standardGeneric("plotPCA")
})
Packages that export an object with 'plotPCA' in the name:
affycoretools: S3 function
CopyNumber450K: S4 generic
DESeq2: S3 function
DESeq: S3 function
DiffBind: 'dba.plotPCA' S3 function
EDASeq: S4 generic
MAIT: S3 function
Rcade: S4 generic
xps: S3 function
Thank you,
Nate Hayden
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