Yep, that was it. Thanks! Hector On Tue, May 3, 2016 at 6:14 AM, Vincent Carey <[email protected]> wrote:
> Try 1.13.9 of OrganismDbi -- I ran into this and Val answered yesterday. > You need to get 1.13.9 from svn source. > > On Tue, May 3, 2016 at 5:57 AM, Hector Corrada Bravo <[email protected]> > wrote: > >> Hello all, >> >> I just ran into this error. Any help appreciated: >> >> >library(Mus.musculus) >> > gr <- genes(Mus.musculus, columns=c("GENEID","SYMBOL")) >> Error in get(name, envir = asNamespace(pkg), inherits = FALSE) : >> object '.testSelectArgs' not found >> > sessionInfo() >> R version 3.3.0 RC (2016-05-01 r70572) >> Platform: x86_64-apple-darwin13.4.0 (64-bit) >> Running under: OS X 10.11.4 (El Capitan) >> >> locale: >> [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 >> >> attached base packages: >> [1] parallel stats4 stats graphics grDevices utils datasets >> [8] methods base >> >> other attached packages: >> [1] Mus.musculus_1.3.1 >> [2] TxDb.Mmusculus.UCSC.mm10.knownGene_3.2.2 >> [3] org.Mm.eg.db_3.3.0 >> [4] GO.db_3.3.0 >> [5] OrganismDbi_1.13.8 >> [6] GenomicFeatures_1.23.31 >> [7] GenomicRanges_1.23.27 >> [8] GenomeInfoDb_1.7.6 >> [9] AnnotationDbi_1.33.15 >> [10] IRanges_2.5.47 >> [11] S4Vectors_0.9.52 >> [12] Biobase_2.31.3 >> [13] BiocGenerics_0.17.5 >> [14] hcbpack_0.1.0 >> [15] RColorBrewer_1.1-2 >> [16] devtools_1.11.1 >> [17] BiocInstaller_1.21.6 >> >> loaded via a namespace (and not attached): >> [1] graph_1.49.1 XVector_0.11.8 >> [3] GenomicAlignments_1.7.21 zlibbioc_1.17.1 >> [5] BiocParallel_1.5.22 tools_3.3.0 >> [7] SummarizedExperiment_1.1.27 DBI_0.4 >> [9] withr_1.0.1 RBGL_1.47.0 >> [11] digest_0.6.9 rtracklayer_1.31.13 >> [13] bitops_1.0-6 RCurl_1.95-4.8 >> [15] biomaRt_2.27.2 memoise_1.0.0 >> [17] RSQLite_1.0.0 Biostrings_2.39.14 >> [19] Rsamtools_1.23.11 XML_3.98-1.4 >> > >> >> [[alternative HTML version deleted]] >> >> _______________________________________________ >> [email protected] mailing list >> https://stat.ethz.ch/mailman/listinfo/bioc-devel >> > > [[alternative HTML version deleted]] _______________________________________________ [email protected] mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
