Have you submitted your ssh key
https://docs.google.com/forms/d/e/1FAIpQLSdlTbNjsQJDp0BA480vo4tNufs0ziNyNmexegNZgNieIovbAA/viewform [https://lh6.googleusercontent.com/aTIh4yWF4TsFYR95qIA_lBuCgvLJ88Q4WzDmdBuie6ndQirxWI0jhfRBF7eO-n3W6SE=w1200-h630-p]<https://docs.google.com/forms/d/e/1FAIpQLSdlTbNjsQJDp0BA480vo4tNufs0ziNyNmexegNZgNieIovbAA/viewform> git / svn transition: ssh keys<https://docs.google.com/forms/d/e/1FAIpQLSdlTbNjsQJDp0BA480vo4tNufs0ziNyNmexegNZgNieIovbAA/viewform> docs.google.com Use this form to link your existing svn credentials with access permissions to the new Bioconductor git repository. To do this, we need an ssh public key. You might have added these to github, see https://github.com/your-github-id.keys. Alternatively, you may provide the ssh public key directly, e.g., copy-pasting ~/.ssh/id_rsa.pub. To generate ssh key pairs, see https://help.github.com/articles/generating-a-new-ssh-key-and-adding-it-to-the-ssh-agent/ Lori Shepherd Bioconductor Core Team Roswell Park Cancer Institute Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 ________________________________ From: Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of Simina Boca <smb...@georgetown.edu> Sent: Tuesday, September 5, 2017 11:40:37 PM To: bioc-devel@r-project.org Subject: [Bioc-devel] updating Bioconductor package that is already on Github Dear all, I hope this isn't a duplicate of another question. Here goes: - I would like to update my swfdr package, which is already on Bioconductor. It is also on Github and my submission process was via opening an issue at https://github.com/Bioconductor/Contributions/issues/213 - At this point there are some slight differences between the Github and Bioconductor versions, for example the Bioconductor version number got automatically bumped to 1.0.0 upon acceptance - I would like to first synchronize what is on Github to have the current version that is on Bioconductor before updating and also include any updates in the next version of the package on Bioconductor - I did "git remote add upstream g...@git.bioconductor.org:packages/swfdr.git" as per some of the instructions for developers, so that now I have: ~\Documents\GitHub\swfdr [master $B"a(B +0 ~0 -1 !]> git remote -v origin https://github.com/leekgroup/swfdr.git (fetch) origin https://github.com/leekgroup/swfdr.git (push) upstream g...@git.bioconductor.org:packages/swfdr.git (fetch) upstream g...@git.bioconductor.org:packages/swfdr.git (push) *but* when I try to fetch upstream content, via: git fetch upstream I get an error: ~\Documents\GitHub\swfdr [master $B"a(B +0 ~0 -1 !]> git fetch upstream Warning: Permanently added 'git.bioconductor.org,34.192.48.227' (ECDSA) to the list of known hosts. Permission denied (publickey). fatal: Could not read from remote repository. Please make sure you have the correct access rights Am I missing something here? Alternatively, I suppose I can just make the changes I want and simply open another issue, although it would be nice to have an easy to sync it with what is already on Bioconductor. Thank you in advance for your help and I apologize if I missed anything obvious! Cheers, Simina -- Simina M. Boca Assistant Professor Innovation Center for Biomedical Informatics (ICBI) Department of Oncology | Georgetown University Medical Center Department of Biostatistics, Bioinformatics and Biomathematics | Georgetown University Medical Center Cancer Prevention and Control Program | Lombardi Comprehensive Cancer Center 2115 Wisconsin Ave NW, Suite 110 Washington, DC 20007 Phone: (202) 687-1545 Fax: (202) 687-5011 http://icbi.georgetown.edu/boca [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
