Hi, Can I ask, is this change under discussion in current release or so far in Bioconductor devel only (my assumption)?
> On 02/15/2018 08:37 AM, Michael Lawrence wrote: > > So is as.list() no longer supported for GRanges objects? I have found it > > useful in places. > > Very few places. I found a dozen of them in the entire software repo. However there are probably more in the wild... > Now you should use as.list(as(gr, "GRangesList")) instead. > as.list() was behaving inconsistently on IRanges and GRanges objects, > which is blocking new developments. It will come back with a consistent > behavior. More generally speaking IRanges and GRanges will behave > consistently as far as their "list interpretation" is concerned. Can we please be assured to be reminded of this prominently in release notes? Thanks! ~malcolm _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel