On 03/19/2018 03:20 AM, Christian Oertlin wrote:
Hej,
I just wanted to check the build report/version number of the anota2seq
package, however it is not listed in the build report anymore.
http://bioconductor.org/checkResults/ (it cannot be found in this list anymore-
which was the case prior to the update)
what could have happened?
Usually this means that the package is fundamentally broken. In this
case the DESCRIPTION file in git is not formatted correctly
$ cat DESCRIPTION
Package: anota2seq
<<<<<<< HEAD
Version: 1.0.1
=======
Version: 1.1.0
>>>>>>> upstream/master
This the result of a 'merge conflict' and you need to resolve it (edit
DESCRIPTION file) so that it is correct. Remember that you are
contributing to the 'devel' branch, where the current version of your
package is 1.1.0. So the next version should be 1.1.1.
Remember also that you can build and check your package locally before
pushing it, so that these errors are easily spotted.
Martin
Christian
________________________________
From: Shepherd, Lori [lori.sheph...@roswellpark.org]
Sent: 16 March 2018 12:32
To: Sean Davis; Christian Oertlin
Cc: bioc-devel@r-project.org
Subject: Re: [Bioc-devel] Applying changes to existing package
you can also check the build and check status on out systems off the daily
build reports. It normally can take up to 24 hours for changes to appear but
you should see the version number bump.
http://bioconductor.org/checkResults/
Lori Shepherd
Bioconductor Core Team
Roswell Park Cancer Institute
Department of Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo, New York 14263
________________________________
From: Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of Sean Davis
<seand...@gmail.com>
Sent: Friday, March 16, 2018 6:31:04 AM
To: Christian Oertlin
Cc: bioc-devel@r-project.org
Subject: Re: [Bioc-devel] Applying changes to existing package
Hi, Christian.
There is not yet a browsable version of the Bioconductor git repository.
The way to check git.bioconductor.org status is, as you noted, to work with
a checkout of the repository locally. If you'd like a more visual view of
your local checkout, you might take a look at one of several desktop
repository browsers.
Sean
On Fri, Mar 16, 2018 at 5:53 AM Christian Oertlin <christian.oert...@ki.se>
wrote:
Hello everyone,
I am the maintainer of the anota2seq package. The package was accepted
for release 3.6 and is on the bioconductor webpage.
I had minor updates for the package which I pushed to the github
repositories by following the steps here:
https://bioconductor.org/developers/how-to/git/sync-existing-repositories/
I can see the changes in my github webpage ChrOertlin/anota2seq/
This might be a very naive question. When I follow to
https://git.bioconductor.org/ I can find the package as listed. Is there
a way to see the contents of that repository other from changing into the
upstream git branch locally, for example a website like my personal github
account? Just to check if everything is in the right place in a more visual
way...
Cheers,
Christian
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--
--
Sean Davis, MD, PhD
Center for Cancer Research
National Cancer Institute
National Institutes of Health
Bethesda, MD 20892
https://seandavi.github.io/
https://twitter.com/seandavis12
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