To the authors/maintainers of the workflows:
Following the svn-to-git migration of the software and data experiment packages last summer, we've completed the migration of the workflow packages. The canonical location for the workflow source code now is git.bioconductor.org Please use your git client to access/maintain your workflow the same way you would do it for a software or data-experiment package. We've also migrated the workflows to our in-house build system. Starting with Bioc 3.7, the build report for the devel versions of the workflows can be found here: https://bioconductor.org/checkResults/devel/workflows-LATEST/ We run these builds every other day (Mondays, Wednesdays, Fridays). Because of limited build resources, we now run the data-experiment builds on Sundays, Tuesdays, and Thursdays only (instead of daily). The links to the package landing pages are not working yet. This will be addressed in the next few days. Please address any error you see on the report for the workflow you maintain. Note that, from now on, we're also following the same version scheme for these packages as for the software and data-experiment packages. That is, we're using an even y (in x.y.z) in release and an odd y in devel. We'll take care of bumping y at release time (like we do for software and data-experiment packages). After the next Bioconductor release (scheduled for May 1), we'll start building the release versions of the workflows in addition to the devel versions. The build report for the release versions will be here: https://bioconductor.org/checkResults/release/workflows-LATEST/ Finally, please note that with the latest version of BiocInstaller (1.29.5), workflow packages can be installed with biocLite(), like any other Bioconductor package. We'll deprecate the old mechanism (workflowInstall()) at some point in the future. Thanks to Andrzej, Lori, Nitesh, and Valerie for working on this migration. Let us know if you have any question about this. H. -- Hervé Pagès Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N, M1-B514 P.O. Box 19024 Seattle, WA 98109-1024 E-mail: hpa...@fredhutch.org Phone: (206) 667-5791 Fax: (206) 667-1319 _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel