Thanks! That makes sense, after getting the most recent version off github
and not through Bioconductor I can replicate the error. That should help
with debugging. Thanks again for your help,
Doug
On Mon, Oct 7, 2019 at 5:30 PM Pages, Herve <hpa...@fredhutch.org> wrote:
> Hi,
>
> It looks like the error occurs in the Heatmap() function from the
> ComplexHeatmap package. What happens is that the devel version of the
> ComplexHeatmap package went thru some important changes back in July and
> August but its version never got bumped so these changes never
> propagated. As a result the version we (end users and developers) have
> on our systems is still the original/unmodified 2.1.0 but the build
> system is using the latest revision in the master branch. If you install
> that version, you should be able to reproduce the error with the
> following minimal example:
>
> > library(ComplexHeatmap)
> > Heatmap(rep(factor("genes"), 2), col=c(genes=1), name="")
> Error in (function (classes, fdef, mtable) :
> unable to find an inherited method for function
> ‘color_mapping_legend’ for signature ‘"NULL"’
>
> This means that ComplexHeatmap::Heatmap() needs to be fixed ASAP **and**
> the version of ComplexHeatmap bumped!
>
> Cheers,
> H.
>
>
> On 10/7/19 10:48, Doug Barrows wrote:
> > Hello,
> >
> > Our package (named 'profileplyr') has been failing on the development
> > version of Bioconductor that will be released later this month. I am
> having
> > difficulty debugging the error because the package continually passes
> > checks on my system (using BioC devel). I have tried many ways to try and
> > solve the error, but until I can replicate the problem, it is very
> > difficult. Do you have any advice or pointers as to the reason it is
> > failing during the build, but not locally?
> >
> > Thanks!
> >
> > Doug Barrows
> >
> > [[alternative HTML version deleted]]
> >
> > _______________________________________________
> > Bioc-devel@r-project.org mailing list
> >
> https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_mailman_listinfo_bioc-2Ddevel&d=DwICAg&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=VQxqgm6jnoeShhnzQtdVjCcxufw0CPRddpSWd98Jh6E&s=9WJAVzk615_qh_ArJHaDaQhcsoRD7uRUSotCEEN_Jcs&e=
> >
>
> --
> Hervé Pagès
>
> Program in Computational Biology
> Division of Public Health Sciences
> Fred Hutchinson Cancer Research Center
> 1100 Fairview Ave. N, M1-B514
> P.O. Box 19024
> Seattle, WA 98109-1024
>
> E-mail: hpa...@fredhutch.org
> Phone: (206) 667-5791
> Fax: (206) 667-1319
>
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