Hi Stefan, It looks like a connectivity issue, likely a transient one. I would just wait and see if it goes away in the next days.
Thanks for keeping a close eye on the build results for your package. Best, H. On 10/23/19 11:20, Graw, Stefan H wrote: > Dear devel team, > > My package "pwrEWAS" produced an error (see below) during checkResults in > CHECK on the windows server. I previously had an OK and did not change > anything. Should I just wait for the next build or how can I fix this issue? > > Thanks, > Stefan > > > > ** running examples for arch 'x64' ... ERROR > Running examples in 'pwrEWAS-Ex.R' failed > The error most likely occurred in: > >> base::assign(".ptime", proc.time(), pos = "CheckExEnv") >> ### Name: pwrEWAS >> ### Title: pwrEWAS - A computationally efficient tool for comprehensive >> ### power estimation in EWAS >> ### Aliases: pwrEWAS >> ### Keywords: DNAm microarray power >> >> ### ** Examples >> >> outDelta <- pwrEWAS(minTotSampleSize = 10, > + maxTotSampleSize = 20, > + SampleSizeSteps = 10, > + NcntPer = 0.5, > + targetDelta = c(0.2, 0.5), > + J = 1000, > + targetDmCpGs = 10, > + tissueType = "Adult (PBMC)", > + detectionLimit = 0.01, > + DMmethod = "limma", > + FDRcritVal = 0.05, > + core = 2, > + sims = 30) > Using temporary cache > C:\Users\biocbuild\bbs-3.10-bioc\tmpdir\RtmpIhL8JZ/BiocFileCache > Warning: download failed > web resource path: > 'https://urldefense.proofpoint.com/v2/url?u=https-3A__experimenthub.bioconductor.org_metadata_experimenthub.sqlite3&d=DwICAg&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=4IVJ68WGWUI9QgCUkQl_JPz4iddilcl4o3MlQ7Tfkqw&s=dwyzUba3xBdIO4kUqbc_AcBCsbI4oX3-0_mn46VpJ84&e= > ' > local file path: > 'C:\Users\biocbuild\bbs-3.10-bioc\tmpdir\RtmpIhL8JZ/BiocFileCache/1e987801b42_experimenthub.sqlite3' > reason: Timeout was reached: [experimenthub.bioconductor.org] Connection > timed out after 10014 milliseconds > Warning: bfcadd() failed; resource removed > rid: BFC1 > fpath: > 'https://urldefense.proofpoint.com/v2/url?u=https-3A__experimenthub.bioconductor.org_metadata_experimenthub.sqlite3&d=DwICAg&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=4IVJ68WGWUI9QgCUkQl_JPz4iddilcl4o3MlQ7Tfkqw&s=dwyzUba3xBdIO4kUqbc_AcBCsbI4oX3-0_mn46VpJ84&e= > ' > reason: download failed > Error in .util_download(x, rid[i], proxy, config, "bfcadd()", ...) : > bfcadd() failed; see warnings() > Calls: pwrEWAS ... .create_cache -> .updateHubDB -> bfcadd -> bfcadd -> > .util_download > Execution halted > > > From > https://urldefense.proofpoint.com/v2/url?u=https-3A__bioconductor.org_checkResults_3.10_bioc-2DLATEST_pwrEWAS_tokay1-2Dchecksrc.html&d=DwICAg&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=4IVJ68WGWUI9QgCUkQl_JPz4iddilcl4o3MlQ7Tfkqw&s=OLr1C0h-Ctwe-4W21Dp_kNsWRD_yoM0ro64ZTsVKgAQ&e= > > ---------------------------------------------------------------------- > Confidentiality Notice: This e-mail message, including a...{{dropped:10}} > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_mailman_listinfo_bioc-2Ddevel&d=DwICAg&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=4IVJ68WGWUI9QgCUkQl_JPz4iddilcl4o3MlQ7Tfkqw&s=HCvWI2DfbulgAzBW_rfLYGdoi949sMtmDlO00JAqSvQ&e= > -- Hervé Pagès Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N, M1-B514 P.O. Box 19024 Seattle, WA 98109-1024 E-mail: hpa...@fredhutch.org Phone: (206) 667-5791 Fax: (206) 667-1319 _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel