Hi Lori, Let me know if you don't hear from Benilton. It shouldn't be much work to fix oligo - we could convert to using Gviz for the graphic that is currently using GenomeGraphs. I can make the change next week if necessary.
Best, Jim On Tue, Nov 26, 2019 at 12:57 PM Shepherd, Lori < lori.sheph...@roswellpark.org> wrote: > typo - heatplus and topGO have responded directly. > > > Lori Shepherd > > Bioconductor Core Team > > Roswell Park Comprehensive Cancer Center > > Department of Biostatistics & Bioinformatics > > Elm & Carlton Streets > > Buffalo, New York 14263 > > ________________________________ > From: Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of > Shepherd, Lori <lori.sheph...@roswellpark.org> > Sent: Tuesday, November 26, 2019 12:54 PM > To: Henrik Bengtsson <henrik.bengts...@gmail.com>; > bioc-devel@r-project.org <bioc-devel@r-project.org> > Subject: Re: [Bioc-devel] CRAN packages depending on broken Bioc 3.11 > packages may be archived > > All of these package have been notified from the Bioconductor side as > well. We hope the maintainers will respond shortly. > heatmap and topGO have responded directly and are working on fixes. I > hope the others are too. > > > > Lori Shepherd > > Bioconductor Core Team > > Roswell Park Comprehensive Cancer Center > > Department of Biostatistics & Bioinformatics > > Elm & Carlton Streets > > Buffalo, New York 14263 > > ________________________________ > From: Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of Henrik > Bengtsson <henrik.bengts...@gmail.com> > Sent: Tuesday, November 26, 2019 12:47 PM > To: bioc-devel@r-project.org <bioc-devel@r-project.org> > Subject: [Bioc-devel] CRAN packages depending on broken Bioc 3.11 packages > may be archived > > In case it's not known, paraphrasing from CRAN notification email, > CRAN [sic!] packages: > > TROM, demi, diffMeanVar, maGUI, metaboGSE > > risk being archived on December 7 because broken Bioconductor dependencies: > > Heatplus, missMethyl, oligo, oligoClasses, topGO > > prevent pdInfoBuilder from being installed. > > I don't maintain any of the above - I'm just the messenger. > > /Henrik > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > > > This email message may contain legally privileged and/or confidential > information. If you are not the intended recipient(s), or the employee or > agent responsible for the delivery of this message to the intended > recipient(s), you are hereby notified that any disclosure, copying, > distribution, or use of this email message is prohibited. If you have > received this message in error, please notify the sender immediately by > e-mail and delete this email message from your computer. Thank you. > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > > > This email message may contain legally privileged and/or confidential > information. If you are not the intended recipient(s), or the employee or > agent responsible for the delivery of this message to the intended > recipient(s), you are hereby notified that any disclosure, copying, > distribution, or use of this email message is prohibited. If you have > received this message in error, please notify the sender immediately by > e-mail and delete this email message from your computer. Thank you. > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > -- James W. MacDonald, M.S. Biostatistician University of Washington Environmental and Occupational Health Sciences 4225 Roosevelt Way NE, # 100 Seattle WA 98105-6099 [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel