Hi AJ, This issue has been resolved. You should be able to push versions from 1.23.2 and onwards.
Going forward, please make sure to check your version numbers for both release and devel. Check if your files have git merge conflicts. Most importantly, if you have questions please ask either on the slack channel or on the bioc-devel@r-project.org<mailto:bioc-devel@r-project.org> mailing list. Best, Nitesh From: AJ Kinstlick <akinstl...@uchicago.edu> Date: Thursday, April 22, 2021 at 6:37 PM To: Nitesh Turaga <nturaga.b...@gmail.com> Cc: Kern, Lori <lori.sheph...@roswellpark.org> Subject: Re: [Bioc-devel] Bioconductor Package Version Hi Nitesh and Lori, I wanted to check in and see if there was anything else I could do at this time to try and fix these version numbers. Will you guys be able to update it manually if nothing else works? Thanks, AJ On Tue, Apr 20, 2021 at 2:39 PM Nitesh Turaga <nturaga.b...@gmail.com<mailto:nturaga.b...@gmail.com>> wrote: Hi, Thanks for looping me in. I�ll take a look at this and keep you posted. Best, Nitesh From: Kern, Lori <lori.sheph...@roswellpark.org> Date: Tuesday, April 20, 2021 at 3:36 PM To: AJ Kinstlick <akinstl...@uchicago.edu<mailto:akinstl...@uchicago.edu>>, Nitesh Turaga <nturaga.b...@gmail.com<mailto:nturaga.b...@gmail.com>> Subject: Re: [Bioc-devel] Bioconductor Package Version Hey Nitesh, I think we might have to force push a version up to straighten this out? Can you please assist. Cheers, Lori Shepherd Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 ________________________________ From: AJ Kinstlick <akinstl...@uchicago.edu<mailto:akinstl...@uchicago.edu>> Sent: Tuesday, April 20, 2021 3:34 PM To: Kern, Lori <lori.sheph...@roswellpark.org> Subject: Re: [Bioc-devel] Bioconductor Package Version Hi Lori, I tried to push the package with version 1.23.1 and got the error "Illegal version bump from '1.18.0' to '1.23.1'. Do you know if there's anything I can do? Thanks, Arjun On Mon, Apr 19, 2021 at 2:03 PM Kern, Lori <lori.sheph...@roswellpark.org<mailto:lori.sheph...@roswellpark.org>> wrote: At Bioconductor releases, the core team increases the version numbers of all packages. It is important to remember to git pull upstream master after each Bioconductor release before making any further changes to package and to resolve all DESCRIPTION file merge conflicts appropriately using the Bioconductor version number or higher. At release we bumped the release 3.12 version of the package to 1.22.0 and devel version of the package to 1.23.0 which is reflected in the landing page and the built version of the package. Somewhere along the way you had a merge conflict and changed the version back down to 1.18.0 in devel. This is not supposed to be possible but managed to slip through our checks. Version numbers should NEVER go down! Please try and change the version number to 1.23.1 and try to push to the master branch again. If you continue to have issues, please reach back out. Cheers, Lori Shepherd Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 ________________________________ From: Bioc-devel <bioc-devel-boun...@r-project.org<mailto:bioc-devel-boun...@r-project.org>> on behalf of AJ Kinstlick <akinstl...@uchicago.edu<mailto:akinstl...@uchicago.edu>> Sent: Monday, April 19, 2021 2:28 PM To: bioc-devel@r-project.org<mailto:bioc-devel@r-project.org> <bioc-devel@r-project.org<mailto:bioc-devel@r-project.org>> Subject: [Bioc-devel] Bioconductor Package Version Hello, I am trying to update the package seq2pathway.data, and I'm getting a message that says "built version is LOWER than in internal repository". Does anyone know how I can correct this error with my version numbers? Trying to commit having directly bumped the version number fails. It appears that the release version ( https://secure-web.cisco.com/1LH1a9lQCskb-SIBRlxp8f9spU0u2LNHud5_T6RYShbRqpMlBTwliMU78f7NlHz79tyzG2n6EWTNid7Lqy5fzQJGv81OhraorQ0DD-LsvscJaix2k19oDjQmvfi9bjcWp7nTl3QGFIfqsQbr0Ahk0xLjYmM6NtRJ1tXPa_Y0MbSE7XUBPCPVQShfnNYm16q0jiVuGjBXdO9iICW5t2TwrBXU4AYB2aaozpemovsNZpHsQ1ZhBWwJuI4H5galFMNzpVbmnrwRlEopQ8AcVtVGjJGIP_5selfIXdAYJtJEvu06MthoNbQ2xTI4yNS0MLbwCqiHh-W0Oc6k4E5ST0T8QRA/https%3A%2F%2Fbioconductor.org%2Fpackages%2F3.13%2Fdata%2Fexperiment%2Fhtml%2Fseq2pathway.data.html<https://urldefense.com/v3/__https:/secure-web.cisco.com/1WUkdyaZv0BnyI_3kaNdttR3xK_jy3xnmg0kUb6CRtZespvTPlexJFvrk3QpYavvM-wVnAioZ0kJCS9PxFTXJHBN-SEwpVL-Y3OJA3uG4zFxbG6-FY2naW_fX_BuKFAck-AnRvYUcftprLvS3_frkXiKTRoj56p9Ui1WOeFoChRC4GQwBmOafhXZBcu3joijIjp44iY578_QiALw_ZYQ7KkNSqG2TpumPe7AVd7jtlOk29XfZqIaNTscU-Wd0xyBLYbY6ytuOr677PUGkmM9s0aiVroWO-IDvmGjwxDERaEqVp3jj_UlpPSiAoRQqZnyN/https*3A*2F*2Furldefense.com*2Fv3*2F__https*3A*2F*2Fsecure-web.cisco.com*2F1LH1a9lQCskb-SIBRlxp8f9spU0u2LNHud5_T6RYShbRqpMlBTwliMU78f7NlHz79tyzG2n6EWTNid7Lqy5fzQJGv81OhraorQ0DD-LsvscJaix2k19oDjQmvfi9bjcWp7nTl3QGFIfqsQbr0Ahk0xLjYmM6NtRJ1tXPa_Y0MbSE7XUBPCPVQShfnNYm16q0jiVuGjBXdO9iICW5t2TwrBXU4AYB2aaozpemovsNZpHsQ1ZhBWwJuI4H5galFMNzpVbmnrwRlEopQ8AcVtVGjJGIP_5selfIXdAYJtJEvu06MthoNbQ2xTI4yNS0MLbwCqiHh-W0Oc6k4E5ST0T8QRA*2Fhttps*2A3A*2A2F*2A2Fbioconductor.org*2A2Fpackages*2A2F3.13*2A2Fdata*2A2Fexperiment*2A2Fhtml*2A2Fseq2pathway.data.html__*3BJSUlJSUlJSUl*21*21BpyFHLRN4TMTrA*21tzz1bWVoSOmrEAxQLu7buEECrA3R1HuoHZE65xUOpI5VnR8_WqsaSnfpKKPFjyDUs_7v*24__;JSUlJSUlJSUlJSUlJSUlJSUlJSUlJSUl!!BpyFHLRN4TMTrA!sTT02yYdQD87-HuGUOSMei2MfXF1PeXDleLVzZJgFCi8ec4hbUG1dElzGmH2n12t6-Gd$>) is 1.23.0. However, the version that I'm working on (and that bioconductor accepts when committing changes) is 1.18.0 (from https://secure-web.cisco.com/1rIxCTN33O7HYcVU4fgfdpV6I4i9FmPYptspz4hPWUIyNVgawJrqd3T23nAxsOMNUCeGrNGgBxDnOIsgwXBPVXC44ds9TEmRKleV_r0yNPFkYdQpRMaMRP38sK1cRmG7WyYFX3udQykO6JAcmZxk-1md8g2bMBSklyLrLfm4lYFkVo0FcDZCtQFEkGL_74upqfBlrIJI1TXL2V-UipohLdHJOnHZ3QSMPBOZ5UHLIoW_Q2NA2C6M8U0qHmR7jHXyaH_t8EBIT35xPizQhkbmjnPf1nWWgpelGg0bXN9odWbxXMN37PwnxtFYXVJsC9qqXsBp6anVj0XAoTCR-KubbTQ/https%3A%2F%2Fwww.bioconductor.org%2FcheckResults%2F3.13%2Fdata-experiment-LATEST%2Fseq2pathway.data%2F<https://urldefense.com/v3/__https:/secure-web.cisco.com/1Ox9Bx-XIXwrrAxWEJTQMJg6HGQ0fPtT1vludrgwMZOVyy_eFUGp1SjzjA5bRbLryo1c_uQ6-ZtRPUyxrMBeC4yVpMux4dYlAUC8VNqLNea-jdb1ibauyguHgCJyu82pLSd8pYlwKDXiZNLbiZ79eCIKHUsGBC8aJyWBpWz_3PV0oR7KZGHuAP9Ac518sz60A63y6jUyyIydD2GVDy8B2cW0s__2BHHJPdMzgDbK9ooDiFAuAnqCLvifvuXGSA06jgrlxyqLp65PZBBMMLt7uPY_FkzBCumLWWVFJZncYvHP4NvvoMvRyZmmCHDa4igwy/https*3A*2F*2Furldefense.com*2Fv3*2F__https*3A*2F*2Fsecure-web.cisco.com*2F1rIxCTN33O7HYcVU4fgfdpV6I4i9FmPYptspz4hPWUIyNVgawJrqd3T23nAxsOMNUCeGrNGgBxDnOIsgwXBPVXC44ds9TEmRKleV_r0yNPFkYdQpRMaMRP38sK1cRmG7WyYFX3udQykO6JAcmZxk-1md8g2bMBSklyLrLfm4lYFkVo0FcDZCtQFEkGL_74upqfBlrIJI1TXL2V-UipohLdHJOnHZ3QSMPBOZ5UHLIoW_Q2NA2C6M8U0qHmR7jHXyaH_t8EBIT35xPizQhkbmjnPf1nWWgpelGg0bXN9odWbxXMN37PwnxtFYXVJsC9qqXsBp6anVj0XAoTCR-KubbTQ*2Fhttps*2A3A*2A2F*2A2Fwww.bioconductor.org*2A2FcheckResults*2A2F3.13*2A2Fdata-experiment-LATEST*2A2Fseq2pathway.data*2A2F__*3BJSUlJSUlJSU*21*21BpyFHLRN4TMTrA*21tzz1bWVoSOmrEAxQLu7buEECrA3R1HuoHZE65xUOpI5VnR8_WqsaSnfpKKPFjxw9weeF*24__;JSUlJSUlJSUlJSUlJSUlJSUlJSUlJSU!!BpyFHLRN4TMTrA!sTT02yYdQD87-HuGUOSMei2MfXF1PeXDleLVzZJgFCi8ec4hbUG1dElzGmH2n2qzAQ2y$> ). Any help would be greatly appreciated. Thank you, Arjun Kinstlick [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org<mailto:Bioc-devel@r-project.org> mailing list https://secure-web.cisco.com/1s8KFD9r1p8p5NsJBkNYQOhsQ98vGWbY6DnPTuke4g2XWrM7cPh3X_t4WeeIXf_qyKwQ6Gq-Uonn1IyszoxcGfZ6W9GrbQK-4qs0kFdnXEsfO4n-UABuQfINcYYXy-GOjKbNagE1FZ84Ne7ny9ArHRhfHyEkDZRDQER6BvO7lqzeBbkyzF7CfzLhji3Kypl8qx81Zd2bb2KwGO3nIuuBVsndFQBHoMgKfF8hvwAWK-KUOopd-Czfk7C5soniFQ3zE6I722-SeL_gcveKi5FU1iqsXwXfnExkXJgqUmk3UAY2NTLEI9WEtt1PMFEZURK3i-aiIs3lwUvpF9BWBvpVAAQ/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel<https://urldefense.com/v3/__https:/secure-web.cisco.com/1Zq_tSbidcnDAMz7snJXIw1lve7oNUJgKHXtuTOxz7e067EsL0I5VHk-hn-56qGrXWestGGXuyOj1ni0MmQzS8JL5Ach-gOHN6fZ6e4hk0_8mjcLy90jXkh_VGMPVYVzLS7RlPmwOkroRQS3G-1b1KpRAohqR0cFyWMUZXIVFV5FI2qIdBu58BC3TBuheNWNsqa-XFTzyRGA1JlZ1Rc9XpdT4VXrs0jODT1UCx28uGDBDCRU39tYA1Y2fiTDFFvrhDfH159X_QWyVH5HBonrrFnI0c-AkKD9S-r_HEygOLkksHuAR4Hbg5iOq01NPtojC/https*3A*2F*2Furldefense.com*2Fv3*2F__https*3A*2F*2Fsecure-web.cisco.com*2F1s8KFD9r1p8p5NsJBkNYQOhsQ98vGWbY6DnPTuke4g2XWrM7cPh3X_t4WeeIXf_qyKwQ6Gq-Uonn1IyszoxcGfZ6W9GrbQK-4qs0kFdnXEsfO4n-UABuQfINcYYXy-GOjKbNagE1FZ84Ne7ny9ArHRhfHyEkDZRDQER6BvO7lqzeBbkyzF7CfzLhji3Kypl8qx81Zd2bb2KwGO3nIuuBVsndFQBHoMgKfF8hvwAWK-KUOopd-Czfk7C5soniFQ3zE6I722-SeL_gcveKi5FU1iqsXwXfnExkXJgqUmk3UAY2NTLEI9WEtt1PMFEZURK3i-aiIs3lwUvpF9BWBvpVAAQ*2Fhttps*2A3A*2A2F*2A2Fstat.ethz.ch*2A2Fmailman*2A2Flistinfo*2A2Fbioc-devel__*3BJSUlJSUl*21*21BpyFHLRN4TMTrA*21tzz1bWVoSOmrEAxQLu7buEECrA3R1HuoHZE65xUOpI5VnR8_WqsaSnfpKKPFj_a0zTsN*24__;JSUlJSUlJSUlJSUlJSUlJSUlJSUl!!BpyFHLRN4TMTrA!sTT02yYdQD87-HuGUOSMei2MfXF1PeXDleLVzZJgFCi8ec4hbUG1dElzGmH2n890VTGa$> This email message may contain legally privileged and/or confidential information. 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