Yes. If the package is only failing on reisling1 you may ignore for now. Get Outlook for iOS<https://aka.ms/o0ukef> ________________________________ From: Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of Oleksii Nikolaienko <oleksii.nikolaie...@gmail.com> Sent: Friday, March 4, 2022 4:56:03 PM To: Jennifer Wokaty <jennifer.wok...@sph.cuny.edu> Cc: bioc-devel@r-project.org <bioc-devel@r-project.org> Subject: Re: [Bioc-devel] error on riesling1 but not on palomino3
Thanks for the confirmation, Jennifer. Best, Oleksii On Fri, 4 Mar 2022 at 21:28, Jennifer Wokaty <jennifer.wok...@sph.cuny.edu> wrote: > Hi Oleksii, > > > Although it's marked as failing on the devel package page when viewing the > short report, if you click on the long report (top right), it's only > because of the errors on Riesling. I can confirm that that the issues on > Riesling are not a problem for the next Bioconductor release as we will > only be looking for errors on Palomino3 (as well as Nebbiolo1 and Merida1). > This machine has the new R tool chain for R that we must use going forward > for the Windows builds. > > > Jennifer Wokaty > Bioconductor Core Team > ------------------------------ > *From:* Oleksii Nikolaienko <oleksii.nikolaie...@gmail.com> > *Sent:* Thursday, February 24, 2022 5:05 AM > *To:* Jennifer Wokaty > *Cc:* bioc-devel@r-project.org > *Subject:* Re: [Bioc-devel] error on riesling1 but not on palomino3 > > Thanks Jennifer, > I tried to fix it and now ran into another (known?) issue because of lack > of proper support for �snprintf�. I would like to disregard this error, but > could you please confirm that it won�t be a problem for a coming Bioc > release? Package is marked as failing its build on the dev package page� > > Best, > Oleksii > > On Wed, 23 Feb 2022 at 15:14, Jennifer Wokaty < > jennifer.wok...@sph.cuny.edu> wrote: > >> Hi Oleksii, >> >> Palomino3, which has the new UCRT toolchain to allow native support of >> UTF-8 and non-European languages, will replace Riesling1 soon, so please >> disregard the error on Riesling1, which is only running for historical >> reference. >> >> We're also working on a way to help troubleshoot issues related to >> Windows environments. >> >> Jennifer Wokaty >> Bioconductor Core Team >> >> ________________________________________ >> From: Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of Oleksii >> Nikolaienko <oleksii.nikolaie...@gmail.com> >> Sent: Wednesday, February 23, 2022 4:44 AM >> To: bioc-devel@r-project.org >> Subject: [Bioc-devel] error on riesling1 but not on palomino3 >> >> ***ATTENTION: This email came from an external source. Do not open >> attachments or click on links from unknown senders or unexpected emails.*** >> >> Dear Bioc team, >> my package (epiallleleR) currently fails tests on riesling1, but not on >> the >> other hosts. Wrong results are produced by compiled c++ code, and at the >> moment I don't understand why. I can see that both Windows hosts use GCC >> 8.3.0, but the compiler flags are different. I don't have access to >> Windows, but I wasn't able to reproduce this error on my Linux with GCC >> 7.5.0 when tried to set "-fno-reorder-blocks-and-partition" in my >> Makevars, >> or did "pkgbuild::with_debug(devtools::check())". >> What are the other differences between riesling1 and palomino3? Is, for >> example, sizeof(int)<4? And what can I do to debug it if I don't have >> Windows around? >> >> Best regards, >> Oleksii >> >> [[alternative HTML version deleted]] >> >> _______________________________________________ >> Bioc-devel@r-project.org mailing list >> >> https://secure-web.cisco.com/1czX1z4rLD6rwCcE-dI_apGFGZuJzB6l2HsnhOCVRs_qRWFi3NxRdLY6RcA1UzcKDZayL7scaqq49T-VXy25Mj8H9xdYVRGRgFvnomr7x5GmR-XrLzaanQ_WgPXC_i1q1_bZwd_Iljq_AgZnxrIw98sT7m12kDOk1RH3ZvmT5nNrOnCKjAPaQb74KhA_QOjxeFyPy9AxXYym6rqkdl669fDQp2PZ_yBTWm3jmq-gfVy0ciLhXVK_dlK9NM60MfLFB4NuvO-z0SWpC_OEmiU1jekGNcYnfBNi7outl-q22MZseavXkpTqe6xDccw-HgiNX/https%3A%2F%2Furldefense.proofpoint.com%2Fv2%2Furl%3Fu%3Dhttps-3A__stat.ethz.ch_mailman_listinfo_bioc-2Ddevel%26d%3DDwICAg%26c%3DmRWFL96tuqj9V0Jjj4h40ddo0XsmttALwKjAEOCyUjY%26r%3DFKSqKXkUOES-D4VQb2jSn9QK7Vz5lE18rLcyn73CPhA%26m%3DB6xvuxERd0zSWbao7oo7byBakBmrV9_gcBwdPoQjWfU%26s%3DCaWbJnskDbCqNtl0c7wj_FQLs6tJcb5PktYg_0E9h10%26e%3D >> > [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://secure-web.cisco.com/1Rr9eT6x_bAWt0KxHNQSoePSjExRNtGxnHs9_rULBCQ3rkc7A6awTr_eLLsVASQcZlc_ijVEyf6Ddl6Oy5LyR059gVCy-xC5H5oBM0ZllyW0_qXezZEcLnHr56xLg95Ma-deEcN1RuBtx9tQzX3HFATc_-KTVEvP8tyRvQAIsJRqz7Drzmtx7det2jX4582mM2Agwnl101EbAeBkVB1a7tPZSww1SYArrBjKC6Yr1PUqZK4uARHQXV_YX5zn7Fg0wq-P-tSzAgZUlcHO11_IDEz5SXVWa-8bi4tFJkWN-AVAfjXVM4X_sv_81ZCGIF3Zw/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. [[alternative HTML version deleted]]
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