Okay, after some quick search, I did git checkout RELEASE_3_15 git cherry-pick master git push
Is this what I should do? From: "Wu, Hao" <hao...@emory.edu> Date: Friday, September 30, 2022 at 6:08 PM To: Vincent Carey <st...@channing.harvard.edu> Cc: "bioc-devel@r-project.org" <bioc-devel@r-project.org>, Harry Feng <hxf...@case.edu> Subject: Re: [External] Re: [Bioc-devel] error in bioconductor package DSS Vince, Thanks for the prompt reply. Can you provide more instruction on how I should look at a particular branch and commit the changes to that? When I do git clone, what branch did I get? Hao From: Vincent Carey <st...@channing.harvard.edu> Date: Friday, September 30, 2022 at 6:06 PM To: "Wu, Hao" <hao...@emory.edu> Cc: "bioc-devel@r-project.org" <bioc-devel@r-project.org>, Harry Feng <hxf...@case.edu> Subject: [External] Re: [Bioc-devel] error in bioconductor package DSS I don't think you are looking at the RELEASE_3_15 branch, but that is where the error is occurring. On Fri, Sep 30, 2022 at 6:03 PM Wu, Hao <hao...@emory.edu<mailto:hao...@emory.edu>> wrote: Hello, I recently received an email regarding an error for DSS: https://bioconductor.org/checkResults/3.15/bioc-LATEST/DSS/palomino3-buildsrc.html<https://nam11.safelinks.protection.outlook.com/?url=https%3A%2F%2Fbioconductor.org%2FcheckResults%2F3.15%2Fbioc-LATEST%2FDSS%2Fpalomino3-buildsrc.html&data=05%7C01%7Chao.wu%40emory.edu%7C02fb9e1ebad54540b2b208daa32ffe73%7Ce004fb9cb0a4424fbcd0322606d5df38%7C0%7C0%7C638001723811885161%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=H3Em1Xm13tkGjw7b2%2FJP1OQtj4Gcv7OqIf8GwrCJgTM%3D&reserved=0>. The error is about the parallel computing in Windows. However, I have corrected this error a while ago, and it has passed the compilation before. It’s not clear why the error appeared again, since in the source code on bioconductor, the error shouldn’t be there. To be more specific, the message says that the error happened in line 338-340 in the vignette (DSS.Rmd): Quitting from lines 338-340 (DSS.Rmd) Error: processing vignette 'DSS.Rmd' failed with diagnostics: Shrinkage estimator in parallel computing encountered errors. Please switch to single core. However, if I do “git clone g...@git.bioconductor.org:packages/DSS<mailto:g...@git.bioconductor.org<mailto:g...@git.bioconductor.org>:packages/DSS>” to get the DSS source code, you can see lines 338-340 in DSS.Rmd are commented out. It seems the system is still compiling the old version. I’m very confused. Could someone help? Thank you very much. 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